Ciona savignyi set in order of scaffold number July 17, 2003 D. Nelson

paired_scaffold_2    1 gene 63% to seq 202                             81  1e-20

paired_scaffold_3    1 gene ortholog of seq 40                         59  3e-08

paired_scaffold_10   4 genes seq 36 orth, Cs2a and 2 more related     243  2e-63

paired_scaffold_12   1 gene 74% to seq 14                             129  3e-29

paired_scaffold_15   1 gene Cs4V5a                                     63  3e-09

paired_scaffold_23   1 gene ortholog to seq 169  

paired_scaffold_36   2 geneS seq 62 ortholog  SEQ 110 ORTH            169  3e-41

paired_scaffold_51   1 gene 62% to seq 39                             100  1e-20

paired_scaffold_56   1 gene 68% to seq 49                              69  3e-11

paired_scaffold_58   2 genes seq 145 orthologs ci0100143467

paired_scaffold_63   1 gene 75% to seq 46                              56  3e-07

paired_scaffold_64   3 gene 61% to seq 157, 67% to seq 102, 69% to 103 91  8e-18

paired_scaffold_65   5 genes 79% to seq 208 4 like _445                67  2e-10

paired_scaffold_66   4 genes like seq 157 and 198                     134  8e-31

paired_scaffold_76   8 genes including Cs2b                           112  1e-36

paired_scaffold_81   3 genes like 160, 129 and 109                     35   0.88

paired_scaffold_94   1 gene best to 11A1                              169  3e-41

paired_scaffold_103  2 genes ortholg C of seq 41 and 74% to seq 17    126  2e-28

paired_scaffold_112  2 genes 69% to seq 66, CYP3 like seq              75  4e-13

paired_scaffold_124  1 gene 65% to seq 202                             79  4e-14

paired_scaffold_126  1 gene 69% to seq 112                             48  8e-05

paired_scaffold_129  3 genes like seq 43, Cs204 like, 182              81  2e-18

paired_scaffold_142  2 genes seq 157 orth and seq 25 orth             100  2e-20

paired_scaffold_167  1 gene Cs192                                      35   0.68

paired_scaffold_174  1 gene seq 164 ortholog 78%

paired_scaffold_178  1 gene new 53% to seq 36                         187  8e-47

paired_scaffold_181  1 gene Cs4V5b, 1 3A fragment                      84  1e-15

paired_scaffold_186  3 genes Cs41a, seq 118 and 180 orthologs         131  7e-30

paired_scaffold_207  1 complete gene    seq 26 ortholog               270  7e-72

paired_scaffold_214  1 gene 51% to seq 160

paired_scaffold_233  1 gene 66% to seq 107                             34    1.5

paired_scaffold_238  1 gene 76% to seq 232

paired_scaffold_278  4 complete genes, 2 frags. Seq 34 ortholog       322  2e-87

paired_scaffold_298  3 genes Cs41b   _445 like    Cs151               131  5e-30

paired_scaffold_300  1 gene ortholog of ci0100142705 same as seq 136

paired_scaffold_309  1 gene 77% to seq 109                             35   0.68

paired_scaffold_315  3 genes 85% to seq 184 and like seq 43 and _445   92  5e-18

paired_scaffold_323  3 genes 69 and 70% to seq 102 , 103 96% to_174    98  8e-20

paired_scaffold_329  1 gene 63% to seq 43                              86  4e-16

paired_scaffold_330  1 gene 87% to seq 182                             34    1.2

paired_scaffold_347  4 genes like seq 7a and 7b                        83  2e-15

paired_scaffold_366  1 gene best savignyi hit to CYP24                 88  7e-17

paired_scaffold_377  1 gene Mostly new 80% to Cs2b                    103  7e-41

paired_scaffold_395  1 gene 70% to seq 31                              56  3e-07

paired_scaffold_401  4 genes like 202, 66 and 196, 166                 71  8e-12

paired_scaffold_408  1 gene and 1 frag. ortholog to seq 42            147  7e-35

paired_scaffold_421  1 gene 67% to seq 6                               70  1e-11

paired_scaffold_422  2 genes orthologs of seq 190 and 94

paired_scaffold_433  1 gene 63% to seq 157                             94  9e-19

paired_scaffold_445  2 genes orthologs of seq 110

 

97 Cs genes and 4 frags