BLACK COTTONWOOD P450S ACCESSION NUMBERS 566 models complete shown in yellow

Last modified Mar. 7, 2005  David R. Nelson

Made some minor name revisions on 8/24/2006 mostly v1, v2 changes to P1, P2 etc.

 

Complete list of P450s found by blast searches, yellow are finished assembled seqs. 

cyan seqs have a model that is retrieved and in a sequence file of cottonwood P450s.

Many of the models are short or otherwise wrong.

566 total cottonwood sequences, 566 assembled, all P450 models (524) retrieved. Some P450 sequences have no models at JGI. Two adjacent models are sometimes from a single gene. Some JGI models fuse two different genes into a hybrid gene.

one bacterial contamination = scaf_2810. A CYP39 contamination = scaffold_11900.

 

61 sequences were found in the JGI annotation but not in my first 5-6 blast searches

53 sequences in my blast output had no P450 models in JGI

 

searched with 85A 90A 71B2 97A3 72A7

 

Sequences in the 53 families shown in Blue have been assigned names.

 

All 566 sequences are named.

 

Plant P450s sort into 62 families in 10 clans.

Clans are clusters of related families. 

Six clans have only one family CYP51 (2), CYP74 (9), CYP97 (3), CYP710 (1),

CYP711 (3), CYP727 (2)

(20 sequences in this group) All have been assembled and named.

 

All members of these 6 one family clans have been assembled

 

Parentheses show how many sequences are in the collection for each family.

These numbers include pseudogenes and possible duplicate sequences, so the

count of full length functional sequences is less.

All sequences have been shown as belonging to one of the 62 plant families,

or CYP749, the only new plant family in cottonwood (CYP72 clan).

 

The CYP71 clan has 26 families, some are specific for other taxa like CYP99,

CYP719, CYP723, CYP726.  That leaves 22 families.

CYP71 (66), CYP73 (4), 75 (3), 76 (17), 77 (4), 78 (14), 79 (6), 80 (8), 81 (50),

82 (36), 83(21), 84 (4), 89 (19), 92(13), 93 (9), 98 (6), 701 (1), 703 (2), 705 (8),

706 (5), 712 (7), 736 (25) these are now all assembled. (328 sequences in this clan)

 

The CYP72 clan has 8 families.  All are present in cottonwood. CYP72 (21), 709 (2),

714 (7), 715 (3), 721 (13), 734 (2), 735 (2), 749(18) All are assembled.

(68 sequences in this clan)

 

The CYP85 clan has 16 families.  CYP702, 708 and CYP725 seem to be absent in Populus.

That leaves 13 families.  CYP85 (4), 87 (20), 88 (4), 90 (9), 707 (8), 716 (27),

718 (2), 720 (1), 722 (2), 724 (2), 728 (17), 729 (2), 733 (1). These have all been assembled and named. (99 sequences in this clan)

 

The CYP86 clan has 7 families. CYP730, CYP731 and CYP732 are only found in rice so

far. There are 4 families in cottonwood CYP86 (9), CYP94 (16), CYP96 (11) and

CYP704 (15). All members of the CYP86 clan have been assembled and named.

(51 sequences in this clan)

 

All 566 sequences are now assembled.

 

Scaffold_2810 is a bacterial contamination from another JGI genome Ralstonia metallidurans. (100% match)

 

Scaffold_11900 is a CYP39 contamination, most like chicken CYP39.

 

Most CYP71 clan members have only one intron in the middle region, making them fairly

easy to assemble.  The CYP701 family is an exception, and it should belong in another

clan.

 

 

LG_I          (-)   174753-172748   CYP716D1 46% to 716A1

LG_I          (-)   178465-176158   CYP716D2v1 47% to 716A1

LG_I          (-)   185470-183274   CYP716D3v1 47% to 716A1

LG_1          (-)   183202-183113   CYP716D3-de1bv1 partial exon 1 pseudogene -de1b

LG_I          (-)  1663727-1659176  CYP727B1 44% TO CYP727A1 85% to 727B2

LG_I          (+)  2171265-2172908  CYP80E1 39% to 76C4

LG_I          (-)  3924905-3921817  CYP78D3v1 51% to 78A5

LG_I          (-)  4925909-4924104  CYP51G1

LG_I          (+)  6124306-6126694  CYP78A22 68% to  78A9

LG_I          (-)  8142817-8140384  CYP87A7 76% to 87A2 ortholog?

LG_I          (+)  8155946-8158046  CYP80E2 41% to   76G1

LG_I          (-)  8580345-8578719  CYP76F3 47% to 76C4

LG_I          (-) 16937584-16936049 CYP86A18 78% to 86A1 Arab. 90% to 86A19

LG_I          (+) 17454906-17459858 CYP707A9 69% to 707A2

LG_I          (-) 19620275-19616562 CYP87D1P N-term and C-term only (seq gap)

LG_I          (-) 19635300-19632986 CYP87D2v1 45% to 87A2

LG_I          (-) 19665613-19663169 CYP87D3 97% to scaf_9597

LG_I          (-) 19679729-19677282 CYP87D4 44% to 87A2

LG_I          (-) 19683439-19680773 CYP87D5 50% to 87A2

LG_I          (-) 19703740-19702073 CYP705B6 44% to 705A2

LG_I          (+) 19811612-19812590 CYP71B44P like pseudogene 51% to 71B36

LG_I          (+) 19972937-19975122 CYP75A11 80% to 75A8 87% to CYP75A12

LG_I          (-) 20250132-20251678 CYP94F1  46% to 94D22

LG_I          (+) 20278749-20279837 CYP87D6P 74% to LG_IX   (+)  1537124

LG_I          (-) 22500323-22497486 CYP724B8 55% to 724B1, 52% to 724B7

LG_I          (-) 23341018-23339071 CYP82J1 50% to 82C2

LG_I          (-) 23611288-23610335 CYP82J1P

LG_I          (-) 23945857-23944313 CYP94B7  61% to 94B2

LG_I          (-) 24001619-24000402 CYP89A25 53% to 89A5

LG_I          (-) 29491328-29490406 CYP71D36Pv1 PSEUDOGENE 61% TO CYP71D26

LG_I          (-) 29497891-29497622 CYP71D35Pv1 pseudogene no model exists

LG_I          (-) 29516258-29514652 CYP71D34 93% to CYP71D28v1 52% to 71D10

LG_I          (-) 29524379-29524047 CYP71D33P  pseudogene

LG_I          (-) 29530020-29529344 CYP71D32P pseudogene

LG_I          (-) 29532948-29532496 CYP71D31P pseudogene

LG_I          (-) 29540735-29539563 CYP71D30P pseudogene

LG_I          (-) 29575643-29574039 CYP71D29 54% to 71D11 93% to 71D34

LG_I          (-) 29606262-29604787 CYP71D28v1 55% to 71D11

LG_II         (+)   611387-613607   CYP87D7P pseudogene 47% to 87A2

LG_II         (-)  1594296-1594132  CYP83F1-se1[1] pseudogene N-term fragment

LG_II         (-)  1597238-1596704  CYP83F1-se2[1] pseudogene no gene model exists

LG_II         (-)  1617938-1616292  CYP83F1 53% to 83A2, 97% to 83F4, 72% to 83F2

LG_II         (+)  1630135-1630206  CYP83F2-se1[1]  N-term fragment

LG_II         (+)  1650845-1651086  CYP83F2-se2[2] pseudogene no gene model exists

LG_II         (+)  1655600-1657684  CYP83F2 48% to 83A2, 96% to 83F3

LG_II         (+)  1667099-1667266  CYP83F2-se3[2] pseudogene 100% to LG_II 1702772

LG_II         (+)  1671977-1672045  CYP83F2-se4[1] N-term fragment

LG_II         (+)  1685541-1685612  CYP83F2-se5[1] N-term fragment

LG_II         (+)  1688396-1689904  CYP83F3v3 95% to 83F3v1

LG_II         (+)  1697711-1697881  CYP83F3-se1[2] pseudogene no gene model exists

LG_II         (+)  1702691-1702858  CYP83F3-se2[2] pseudogene no gene model exists

LG_II         (+)  1707953-1708189  CYP83F3v1-de1b detritus exon 1

LG_II         (+)  1708840-1710924  CYP83F3v1 48% to 83A2, 96% to 83F2, 63% to 83F5

LG_II         (+)  2131180-2134259  CYP722A1 61% to 722A1 46% to 722B1 in rice

LG_II         (+)  2695301-2696854  CYP94A11 67% to 94A4, 85% to 94A9v1

LG_II         (+)  2705673-2707202  CYP94A12 67% to 94A4, 83% to 94A9v1

LG_II         (-)  4100255-4098382  CYP718A1 67% to 718A1 Arab. = ortholog

LG_II         (+)  4123900-4125604  CYP78A20 67% to 78A7

LG_II         (+)  4750944-4753397  CYP733A1 70% to rice 733A1 = ortholog

LG_II         (-)  9145798-9143865  CYP81B5 50% to 81D8

LG_II         (-)  9151207-9149369  CYP81B4 49% to 81D2

LG_II         (-)  9154259-9152268  CYP81B3v1 47% to 81D8

LG_II         (+)  9173256-9175652  CYP81C5 51% to 81K1

LG_II         (+)  9525988-9529091  CYP707A14 69% to 707A4

LG_II         (-)  9774605-9770969  CYP701A11 68% to 701A3

LG_II         (-)  9856083-9854503  CYP74A1

LG_II         (-) 10070853-10066188 CYP721A3 53% to 721A1 no correct model exists

LG_II         (-) 10420336-10419995 CYP714E3P no correct model exists 69% to 714E2

LG_II         (+) 11243028-11244627 CYP76T1 51% to 76C4

LG_II         (+) 11302436-11304039 CYP76T2 50% to 76C4

LG_II         (+) 11339047-11340633 CYP76T3 52% to 76C4

LG_II         (+) 11361815-11362516 CYP76T4 partial seq

LG_II         (+) 11370278-11371869 CYP76T5 52% to 76C4

LG_II         (-) 13208335-13206633 CYP703A4 78% to 703A2

LG_II         (+) 13511138-13512986 CYP78A24 72% to 78A9

LG_II         (-) 16041237-16040849 CYP79D10P 78% to 79D8

LG_II         (-) 16609905-16609795 CYP82C-se3[2] pseudogene no gene model exists

LG_II         (+) 24351775-24351969 CYP721A-se1[4] no gene model exists

LG_II         (+) 24360275-24360469 CYP721A-se2[4] C-term, no model exists

LG_II         (+) 24440445-24442978 CYP721A2v1 100% to scaffold_1746

LG_III        (+)  3591921-3593661  CYP92A21 3 aa diffs to LG_III (+) 3610917

LG_III        (+)  3593032-3593661  CYP92A20P duplicate of exon 2

LG_III        (+)  3610917-3612657  CYP92A20 63% to 92A9

LG_III        (+)  3641419-3641829  CYP92A19P

LG_III        (+)  3649066-3651041  CYP92A19 71% to 92A9

LG_III        (+) 10170571-10172100 CYP89A26 48% to 89A5 no introns

LG_III        (+) 11000576-11004081 CYP706D1

LG_III        (+) 11353007-11354677 CYP76F4 47% to 76C4

LG_III        (-) 11661882-11664294 CYP87A8 76% to 87A2

LG_III        (-) 12109591-12107981 CYP86A21 74% to 86A7 Arab. 76% to 86A20

LG_III        (-) 13439255-13437042 CYP78A23 68% to 78A9

LG_III        (+) 14476000-14477787 CYP51G5

LG_III        (+) 15447061-15449577 CYP78D2 50% to 78A5

LG_III        (+) 17762390-17766956 CYP727B2 43% TO CYP727A1 85% to 727B1

LG_IV         (+)   521696-523425   CYP728D7v1 74% to 728D4

LG_IV         (+)   526815-528578   CYP728D8 54% to 728B3

LG_IV         (-)   589294-587777   CYP77B3 68% to 77B1 no introns 71% to CYP77B4

LG_IV         (+)   605695-607218   CYP77B4 66% to 77B1 no introns 71% to CYP77B3

LG_IV         (+)  3871814-3873941  CYP79D8 56% to 79D1, 73% to 79D5

LG_IV         (+)  5434809-5437753  CYP735A6 69% to 735A1, 91% to 735A5

LG_IV         (+)  7961227-7961940  CYP81S10P

LG_IV         (+)  8826205-8827922  CYP82L1 55% to 82G1

LG_IV         (-) 10881282-10879750 CYP710A12 68% to 710A1

LG_IV         (+) 13600264-13602937 CYP85A1  68% to CYP85A1 Arab., 90% to 85A3

LG_IV         (+) 13604641-13606601 CYP85A1P duplicate of exons 2-8 100% identical

LG_IV         (+) 13987032-13988462 CYP74C6v1 79% to CYP74C8

LG_IV         (+) 13991961-13993406 CYP74C7 78% to 74C6v1

LG_IV         (+) 14183519-14183770 CYP87D-se2[6:7] exons 6,7 identical to scaff_12583

LG_IV         (+) 15006407-15008324 CYP84A13P pseudogene 65% to 84A1

LG_IV         (-) 16503207-16503109 CYP87D11 44% to 87A2

LG_V          (+)   371877-373430   CYP96F1 46% to 96A10

LG_V          (+)   388448-390004   CYP96F2 45% to 96A10

LG_V          (-)   490310-489234   CYP87D13P  pseudogene partial

LG_V          (+)  1583967-1585490  CYP89A18 63% to 89A5

LG_V          (-)  1989840-1988143  CYP78A18 70% to 78A7

LG_V          (+)  2585685-2588232  CYP86B4 72% to 86B1 92% to 86B5

LG_V          (-)  2790530-2789037  CYP96G1 42% to 96A16, 39% to 96A8

LG_V          (+)  5628907-5630507  CYP81S7 55% to 81D8

LG_V          (+)  5648929-5650535  CYP81S8 51% to 81D8

LG_V          (+)  5671068-5672773  CYP81S9 51% to 81D1

LG_V          (-) 13684462-13682757 CYP78A19 68% to 78A7

LG_V          (+) 13756134-13757679 CYP718A2P pseudogene 80% to 718A1 Populus

LG_V          (+) 15327217-15328314 CYP94A9v2 72% to 94A4, 1 aa diff to 94A9v1

LG_V          (-) 15969731-15965354 CYP722A2P pseudogene 67% to 722A1 Populus

LG_V          (-) 16417765-16416052 CYP83F5 50% to 83A2, 62% to 83F1

LG_V          (-) 16414413-16413906 CYP83F5-de2bv1 pseudogene

LG_VI         (-)   451262-445524   CYP97B7 79% to 97B4, 75% to 97B3

LG_VI         (-)  1075479-1074052  CYP71-un3 potri pseudogene

LG_VI         (-)  1500143-1497695  CYP709F1 47% to 709B1

LG_VI         (-)  1982315-1979658  CYP98A27 81% to 98A3

LG_VI         (+)  2012189-2013688  CYP94D22 60% to 94D2 Arab.

LG_VI         (-)  5146670-5145983  CYP73A45P pseudogene 82% to 73A44

LG_VI         (-)  5680025-5678363  CYP716A8 62% to 716A2

LG_VI         (+)  6134143-6134717  CYP71D46P 52% to 71D38

LG_VI         (-)  6443611-6441801  CYP76A8 49% to 76G1

LG_VI         (+)  9538846-9541818  CYP734A9 78% to 734A1 (= old 72B1) 88% to 734A10

LG_VI         (+) 11287066-11288715 CYP712A6 55% to 712A1

LG_VI         (-) 15175313-15172776 CYP711A3 72% to 711A1, 90% to 711A2

LG_VII        (-)   307725-307385   CYP704A10-se5d6d pseudogene 1aa diff to 704A10

LG_VII        (+)  1874399-1875984  CYP81S13 52% to 81D8

LG_VII        (+)  4351919-4358145  CYP89A17 63% to 89A5

LG_VII        (+)  4652216-4653805  CYP736A1v1 53% to 736A1

LG_VII        (+)  4667173-4668746  CYP736A4v1 53% to 736A1

LG_VII        (+)  4685384-4686979  CYP736A5v1 52% to 736A1

LG_VII        (+)  4700002-4701575  CYP736A6P1 2 frameshifts and 1 stop codon

LG_VII        (+)  4706173-4707749  CYP736A6P2 2 frameshifts and 1 stop codon

LG_VII        (+)  4725314-4725388  CYP736A7P1-de2b C-term fragment

LG_VII        (+)  4728397-4729273  CYP736A7P1

LG_VII        (+)  4782357-4782458  CYP736A-se1[1] N-term only

LG_VII        (+)  4796192-4796347  CYP736A-se2[1] N-term no model exists

LG_VII        (+)  4799802-4800209  CYP736A-se3[2] C-term

LG_VII        (+)  4834273-4835846  CYP736A8v1 54% to 736A1

LG_VII        (+)  4847468-4849041  CYP736A9 54% to 736A1

LG_VII        (+)  4864410-4865111  CYP736A10Pv1 missing C-term

LG_VII        (+)  4873686-4875265  CYP736A11 54% to 736A1

LG_VII        (-)  5114877-5113187  CYP78A21v1 69% to 78A7

LG_VII        (-)  5203243-5201726  CYP96A17 54% to 96A10

LG_VII        (-)  5753477-5751477  CYP71D43 43% to 71B33

LG_VII        (-)  5804810-5802796  CYP71D42/CYP71D44 same gene 49% to 71D4

LG_VII        (+)  5888964-5891028  CYP71D41 43% TO 71B33

LG_VII        (+)  6192453-6195080  CYP86B5 74% to 86B1 92% to 86B4

LG_VII        (-)  9437395-9434788  CYP92A22 63% to 92A9

LG_VII        (+) 10101681-10103846 CYP721A9P pseudogene exons 1 and 3

LG_VII        (+) 10780123-10780564 CYP749A11P pseudogene 65% to CYP749A7

LG_VII        (+) 10675275-10680393 CYP90B7 92% to scaf_57 90B seq

LG_VII        (+) 11271727-11277154 CYP90C3 63% to 90C1

LG_VII        (+) 11484731-1486533  CYP84A11 73% to 84A1

LG_VII        (+) 12626860-12628510 CYP716A10 71% to scaffold_164 (-) 229701

LG_VIII       (-)  1164925-1163381  CYP77A10 no introns 72% to 77A4

LG_VIII       (-)  1227617-1225656  CYP714E5 duplicate of LG_VIII (-) 1236190

LG_VIII       (-)  1236190-1234228  CYP714E6 45% to 714A1 51% to 714C2

LG_VIII       (+)  3862555-3866960  CYP90A6 77% to 90A1

LG_VIII       (+)  4083957-4088046  CYP90A6P 100% to LG_VIII (+) 3862555

LG_VIII       (+)  5139033-5140582  CYP71D27 51% to 71D4 59% to LG_I.29

LG_VIII       (-)  5534676-5532241  CYP704B3 77% to 704B1

LG_VIII       (+)  6182991-6184553  CYP89A23 56% to 89A4

LG_VIII       (-)  8088062-8086557  CYP96H1

LG_VIII       (+) 12396377-12399637 CYP86C5v2 only 2 aa diffs to 86C5v1 (duplicate)

LG_VIII       (-) 12460686-12458958 CYP71B42P pseudogene

LG_VIII       (-) 12479032-12476806 CYP71B41 54% to 71B36

LG_VIII       (-) 12482829-12482572 CYP71B41-de1 pseudogene N-term only

LG_VIII       (-) 12489221-12487004 CYP71B40v1 53% to 71B36

LG_VIII       (-) 12534486-12532739 CYP71B39P pseudogene

LG_VIII       (-) 12547429-12545187 CYP71B38 54% to 71B36

LG_VIII       (-) 14685512-14683933 CYP81S14v1 53% to 81D8

LG_IX         (+)   340405-340566   CYP78D-se1[2] pseudogene

LG_IX         (+)  1428300-1429772  CYP94C5  64% to 94C1 no introns

LG_IX         (-)  1437687-1437347  CYP704A10-se5c6c pseudogene 1aa diff to 704A10

LG_IX         (+)  1537124-1539316  CYP87D8 46% to 87A2

LG_IX         (-)  2646866-2644256  CYP84A12 69% to 84A1

LG_IX         (-)  3544141-3542158  CYP82C15v1 49% to 82C2

LG_IX         (-)  3494707-3493259  CYP74C8 64% to 74C2 Cucumis melo

LG_IX         (-)  3941290-3938759  CYP707A11 74% to 707A4

LG_IX         (-)  6112639-6110882  CYP75A12 87% to CYP75A11

LG_IX         (+)  6276537-6278244  CYP705B1 46% to 705A2

LG_IX         (+)  6288042-6289749  CYP705B2 46% to 705A2

LG_IX         (+)  6356567-6357732  CYP705B3P pseudogene 48% to 705A12

LG_IX         (+)  6358443-6360623  CYP705B4P pseudogene 44% to 705A2

LG_IX         (+)  6367706-6369461  CYP705B5 45% to 705A2

LG_IX         (+)  6379157-6382449  CYP87D9 49% to 87A2

LG_IX         (+)  6392855-6394949  CYP87D10 45% to 87A2

LG_IX         (-)  7878845-7877310  CYP86A19 78% to 86A1 Arab. 90% to 86A18

LG_IX         (+)  8486677-8491505  CYP707A10 72% to 707A2

LG_IX         (+) 11607769-11608171 CYP749A13P pseudogene 48% to CYP749A4

LG_X          (+)  6643814-6645403  CYP86C6 62% to CYP86C1, no introns, 89% to 86C5v1

LG_X          (-)  6735316-6733923  CYP71B45P pseudogene 75% to CYP71B42P

LG_X          (-)  6738703-6736564  CYP71B43P 52% to 71B36

LG_X          (-)  7735686-7735582  CYP82C-se4[2] pseudogene

LG_X          (+) 11790272-11792193 CYP714F1 49% to 714E5 38% to 714A2

LG_X          (+) 11955163-11963106 CYP96H2P pseudogene 60% to CYP96H1

LG_X          (-) 13512686-13510704 CYP749A3P pseudogene

LG_X          (-) 13518234-13516106 CYP749A4 68% to CYP749A2

LG_X          (-) 13523547-13521574 CYP749A5 60% to CYP749A2

LG_X          (-) 13525095-13524907 CYP749A5-de1b exon 1 pseudogene fragment

LG_X          (-) 13533480-13527660 CYP749A6 59% to CYP749A2

LG_X          (-) 13534846-13534553 CYP749A7-de4b exon 4 pseudogene fragment

LG_X          (-) 13538031-13535767 CYP749A7 57% to CYP749A2

LG_X          (-) 13541431-13540251 CYP749A8P partial pseudogene

LG_X          (-) 13544471-13542249 CYP749A9 56% to CYP749A2

LG_X          (-) 13547164-13545930 CYP749A10P 70% to CYP749A9

LG_X          (-) 14547286-14543918 CYP85A4 55% to 85A1 Arab. 61% to tomato 85A1

LG_X          (-) 15267076-15268515 CYP704B4P pseudogene 72% to 704B3

LG_X          (-) 16928514-16924549 CYP90A7 94% to LG_VIII, 78% to 90A1 Arab.

LG_X          (-) 19404794-19403073 CYP712A4P

LG_X          (+) 20920639-20921376 CYP94C8P 2 aa diffs to CYP94C8v1 assembly error?

LG_X          (+) 20930872-20932371 CYP94C8 60% to 94C1, no introns

LG_X          (-) 21015073-21015481 CYP77A11P pseudogene

LG_XI         (-)    41591-40200    CYP728D1P pseudogene 73% to LG_XI 46116-43045

LG_XI         (-)    46116-43045    CYP728D2 50% to 728B1

LG_XI         (-)    49088-47266    CYP728D3P pseudogene 48% to 728B1

LG_XI         (-)    53775-51945    CYP728D4 49% to 728B1

LG_XI         (-) 11397146-11394711 CYP72D1 49% to 72A8

LG_XI         (-) 11404336-11402643 CYP72D2 missing exon 1 and part of exon 2

LG_XI         (-) 12867601-12867395 CYP71-un5 potri pseudogene

LG_XI         (+) 12873790-12874128 CYP71D37P EXXR to the end with deletions

LG_XI         (+) 12875195-12876930 CYP71D38 47% to 71Y1

LG_XI         (+) 12884309-12886030 CYP71D39 47% to 71K8

LG_XI         (+) 12892840-12894465 CYP71D40P 46% to 71K8

LG_XI         (-) 13358321-13356572 CYP728D5 55% to 728B3

LG_XI         (-) 13365751-13358706 CYP728D6P 52% to 728B1 pseudogene

LG_XI         (+) 14624830-14626505 CYP716C1 47% to 716A2

LG_XII        (-)  8738627-8735696  CYP729A3 52% to 729A1

LG_XII        (-) 10752455-10550851 CYP71AN4 44% to 71A22 65% to CYP71AN5

LG_XII        (+) 10772698-10774358 CYP71AP1 44% to 71B2 98% to CYP71AP2

LG_XII        (+) 10777737-10779397 CYP71AP2 43% to 71B2 98% to CYP71AP1

LG_XII        (+) 10791887-10793547 CYP71AP3 42% to 71B2 95% to CYP71AP1

LG_XII        (-) 11326129-11324600 CYP94B6  62% to 94B3 Arab.

LG_XII        (-) 12462598-12462165 CYP728F1-se2[3:4]v1 49% to 728C1

LG_XII        (-) 12797236-12793955 CYP715A2  64% to 715A1

LG_XII        (-) 13076542-13074912 CYP80C1 45% to 76C2 49% to 80B2

LG_XII        (-) 13087162-13085557 CYP80D2 42% to 76C2

LG_XII        (-) 13100933-13099325 CYP80D1 41% to 76C2

LG_XII        (-) 13112302-13111922 CYP80D-se1[1]

LG_XII        (-) 13549852-13546391 CYP704A12 possible pseudogene 60% to 704A11

LG_XIII       (-)  1795947-1794304  CYP93B7 43% to 93D1

LG_XIII       (-)  6200373-6197990  CYP75B11 75% to 75B1

LG_XIII       (-)  6515028-6513496  CYP94C7 58% to 94C1

LG_XIII       (-)  6605099-6603552  CYP89A11 like 60% to 89A5

LG_XIII       (-)  6638846-6637305  CYP89A12 like 63% to 89A5

LG_XIII       (-)  6648270-6646729  CYP89A13 like 63% to 89A5

LG_XIII       (-)  8092103-8090977  CYP728D10P pseudogene

LG_XIII       (-)  8094512-8092845  CYP728D11P pseudogene

LG_XIII       (-)  8108137-8108927  CYP728D9P pseudogene 41% to 728B2

LG_XIII       (+) 12617173-12619036 CYP79D5 58% to 79D1

LG_XIII       (+) 12759202-12761064 CYP79D6v1 57% to 79D1 95% to 79D5

LG_XIII       (+) 12783206-12785069 CYP79D7 58% to 79D1, 99% to 79D5

LG_XIII       (-) 12825303-12821368 CYP73A42  85% to 73A5, 96% TO 73A43, 2 introns,

LG_XIII       (+) 13030170-13032201 CYP714E4 46% to 714A1 53% to 714C2

LG_XIII       (+) 13095453-13098147 CYP88A8 69% to 88A4 83% to CYP88A9

LG_XIV        (-)   930738-928767   CYP81B7 51% to 81D8

LG_XIV        (+)  1587908-1590100  CYP704A9 64% to 704A2

LG_XIV        (+)  1590589-1598508  CYP704A10 56% to 704A2

LG_XIV        (+)  1600028-1600469  CYP704A11-de5b6b pseudogene 1 aa diff to 704A11

LG_XIV        (+)  1602002-1602298  CYP704A10-de1b pseudogene 74% to 704A10

LG_XIV        (+)  1611107-1611878  CYP704A10-de1c2c pseudogene 87% to 704A10

LG_XIV        (+)  1624826-1627211  CYP704A11 90% to 704A10

LG_XIV        (-)  2543966-2542269  CYP86A20 80% to 86A8 Arab. 76% to 86A21

LG_XIV        (-)  3557159-3556743  CYP703A5P like pseudogene 76% to 703A4

LG_XIV        (-)  3837010-3835172  CYP78A25 72% to 78A9

LG_XIV        (-)  4631710-4630147  CYP709F2P pseudogene 48% to 709B2 N-term half

LG_XIV        (-)  8217095-8213771  CYP74B7

LG_XIV        (-)  9223410-9223207  CYP71-un1 potri 50% to 71AN4

LG_XIV        (-)  9234477-9232794  CYP71-un2 potri

LG_XIV        (-)  9847839-9845384  CYP724B7 68% to 724B1, 96% to 724B6

LG_XIV        (-) 10688265-10685082 CYP88A9 72% to 88A3, 83% to CYP88A8

LG_XIV        (-) 11123204-11115332 CYP721A8 55% to 721A1

LG_XV         (+)   412465-414027   CYP89A22 52% to 89A5

LG_XV         (-)  6427585-6426017  CYP71AN5 46% to 71B2 65% to CYP71AN4

LG_XV         (+)  6442643-6444377  CYP71AQ1 49% to 71AJ1 47% to 71A12

LG_XV         (+)  6453904-6455556  CYP71AP4 44% to 71B2 90% to CYP71AP1

LG_XV         (-)  6502339-6500813  CYP96F3 44% to 96A1

LG_XV         (-)  6509783-6507479  CYP96F4 44% to 96A1 one intron possible pseudogene

LG_XV         (+)  7113294-7114921  CYP71D23P pseudogene 46% to 71D10

LG_XV         (+)  7140835-7141622  CYP89A14P

LG_XV         (+)  9617055-9618575  CYP96A16v1 1aa diff to CYP96A16v2 = same gene

LG_XV         (-)  9642311-9641958  CYP704A13P pseudogene 75% to 704A12

LG_XV         (-) 10046207-10044971 CYP80C2 43% to 76C2

LG_XV         (+) 10373222-10376509 CYP715A3 62% to 715A1, 83% to 715A3

LG_XVI        (+)   158690-159330   CYP71-un4 potri pseudogene

LG_XVI        (-)   168971-167389   CYP82K1 49% to 82C4

LG_XVI        (-)  1542608-1539021  CYP98A23 76% to 98A3

LG_XVI        (+)  1587227-1588727  CYP94D23v1 64% to 94D2

LG_XVI        (-)  3135000-3133112  CYP93A4 54% to 93D1

LG_XVI        (-)  3142068-3136957  CYP93A7P pseudogene 89% to scaffold_152 (+) 155571

LG_XVI        (-)  3144892-3142631  CYP712C1 51% to 712A2

LG_XVI        (+)  3309276-3311130  CYP712A5 52% to 712A1

LG_XVI        (+)  7802640-7803110  CYP705B7P pseudogene no gene model at JGI

LG_XVI        (-) 13030394-13030137 CYP90B7P 1 aa diff to LG_VII 90B seq exon

LG_XVI        (+) 13154281-13155936 CYP71AN1   44% to 71B10 98% to CYP71AN2

LG_XVI        (+) 13161865-13163520 CYP71AN2v1 44% to 71A12 97% to CYP71AN3

LG_XVI        (+) 13169467-13171129 CYP71AN3   44% to 71A12 97% to CYP71AN2

LG_XVIII      (+)   838110-840693   CYP711A2 73% to 711A1 90% to 711A3

LG_XVIII      (+)  2833441-2835456  CYP92A25 62% to 92A9

LG_XVIII      (+) 12748216-12750034 CYP716A3 58% to 716A2

LG_XVIII      (+) 12757052-12758882 CYP716A4 57% to 716A2

LG_XVIII      (-) 12775733-12773417 CYP716A5 55% to 716A2

LG_XVIII      (-) 12779490-12778023 CYP716A5P duplicate of LG_XVIII 12775733-12773417

LG_XVIII      (-) 12823612-12821563 CYP716A6 53% to 716A2

LG_XVIII      (-) 12848609-12849559 CYP716A7P 91% to LG_XVIII 12823612-12821563

LG_XIX        (+)  1852415-1854550  CYP749A1v1 5aa diffs to scaffold_282

LG_XIX        (+)  1877778-1879913  CYP749A2 5aa diffs to scaffold_282

LG_XIX        (+)  7758422-7760477  CYP728E1 43% to 728B3

LG_XIX        (+)  8392282-8394410  CYP749A14 gene model long at C-term

LG_XIX        (-)  8996596-8994682  CYP716E3

LG_XIX        (-)  9167061-9162988  CYP716E4

LG_XIX        (+) 10989681-10992498 CYP73A43 84% to 73A5, 96% TO 73A42,  2 introns

scaffold_28   (+)   109106-109647   CYP72A50P pseudogene 55% to 72A8

scaffold_28   (-)   306996-304599   CYP92A24 59% to 92A9

scaffold_28   (-)  2755358-2750774  CYP97C4 79% to 97C1, 76% to 97C2 rice

scaffold_28   (+)  3042728-3044399  CYP76A9P pseudogene 41% to 76G1

scaffold_28   (+)  3040250-3041175  CYP76A9P-de2b two C-TERM fragments

scaffold_29   (+)  3163988-3165482  CYP89A27P pseudogene

scaffold_29   (+)  1864490-1864686  CYP88A-se1b2b N-term pseudogene

scaffold_40   (+)   651136-652849   CYP714E2 42% to 714A1 57% to medicago seq. 714E1

scaffold_40   (+)  1195920-1198457  CYP721A4 52% to 721A1

scaffold_40   (+)  1202028-1203778  CYP721A5 53% to 721A1

scaffold_40   (+)  1205348-1207795  CYP721A6P pseudogene

Scaffold_40   (+)  1480809-1482389  CYP74A5

scaffold_40   (-)  1522560-1520144  CYP82C11 gene model short at N-term

scaffold_40   (-)  1527266-1527180  CYP82C-se2[2] heme region 81% to scaf_40 (-) 1555735

scaffold_40   (-)  1533682-1531659  CYP82C10 gene model correct

scaffold_40   (-)  1539510-1539424  CYP82C-se1[2] heme region 81% to scaf_40 1555735

scaffold_40   (-)  1540989-1542721  CYP82D2 gene model correct

scaffold_40   (-)  1551888-1550208  CYP82C9P1 gene model short at N-term

scaffold_40   (-)  1555735-1555331  CYP82C8P3 gene model short

scaffold_40   (-)  1565307-1564681  CYP82C8P2 gene model short

scaffold_40   (-)  1572611-1572060  CYP82C7Pv1 N-term gene model short

scaffold_40   (-)  1585647-1585558  CYP82C5P N-term seq. no gene model at JGI

scaffold_40   (-)  1589818-1590441  CYP82C6P gene model short

scaffold_40   (-)  1598233-1596082  CYP82C5 gene model short

scaffold_40   (-)  2112435-2109420  CYP707A13 70% to 707A4

scaffold_40   (-)  2619478-2619248  CYP81T1-de2c pseudogene heme signature

scaffold_40   (-)  2622115-2620377  CYP81T1 49% to 81D2  

scaffold_40   (-)  2620375-2620241  CYP81T1-de2b pseudogene repeat of C-term seq

scaffold_40   (-)  2625277-2624657  CYP81R5P exon 2

scaffold_40   (-)  2629530-2627051  CYP81R4 joined two

scaffold_40   (-)  2633172-2630892  CYP81C4 45% to 81A7

scaffold_40   (-)  2639518-2637241  CYP81C3 45% to 81A7

scaffold_40   (+)  2662475-2663559  CYP81B8P1 pseudogene

scaffold_40   (+)  2666003-2667947  CYP81B9P

scaffold_40   (+)  2671685-2672180  CYP81B-se1[2] exon 2

scaffold_40   (+)  2676659-2676886  CYP81B8P2 N-term

scaffold_40   (+)  2684818-2687264  CYP81B10 N-term

scaffold_40   (+)  2689865-2690096  CYP81B-se2[1]

scaffold_40   (+)  2691314-2693223  CYP81B11 51% to 81D8

scaffold_40   (+)  2695016-2695445  CYP81B-se3[1]

scaffold_40   (+)  2698671-2700987  CYP81B12 51% to 81D8

scaffold_40   (+)  2701996-2702187  CYP81B12-de2b

scaffold_41   (-)  1505394-1503478  CYP716E1

scaffold_41   (-)  1517260-1515291  CYP716E2

scaffold_44   (-)  1010414-1004762  CYP90D6 70% to 90D1, 90% to scaf 97

scaffold_57   (-)  1038584-1035782  CYP84A10 76% to 84A1

scaffold_57   (-)  1624555-1619874  CYP90B6 78% to 90B1 Arab.

scaffold_57   (+)  1939692-1940233  CYP72A49P pseudogene 51% to 72A8 92% to scaf_28

scaffold_64   (-)   865374-863615   CYP81R1 41% to 81K1

scaffold_64   (-)   881364-879605   CYP81R2 43% to 81K1

scaffold_64   (-)   903647-903045   CYP81R3P

Scaffold_66   (-)    45516-44044    CYP94C6 84% to 94C5, 60% to 94C1

scaffold_66   (+)  1246533-1246730  CYP87D12-de1b 58% to LG_IV (-) 16503207 exon 1

scaffold_66   (-)  1245680-1243218  CYP87D12 47% to 87A2

scaffold_70   (-)   879822-876621   CYP706C5

scaffold_70   (-)  1388718-1387837  CYP93B8P2 39% to 93D1, 40% to 93G1

scaffold_70   (-)  1392931-1392122  CYP93B8P1 100% to scaf_1994

scaffold_70   (+)  1407665-1410186  CYP93B8v1 39% to 93D1, 40% to 93G1

scaffold_70   (+)  1518015-1520473  CYP721A7v1 57% to 721A1

scaffold_86   (-)   269140-268941   CYP81S-se1[2]

scaffold_86   (-)  1256451-1254410  CYP707A15 81% to 707A1

scaffold_87   (+)  1294208-1317779  CYP97A7 79% to 97A3, 73% TO 97A4

scaffold_97   (+)   405069-409781   CYP90D5 67% to 90D1

Scaffold_107  (-)   283300-281741   CYP96F5 45% to 96A10, 54% to 96F1

Scaffold_118  (-)   331714-330901   CYP88A10P pseudogene

scaffold_122  (+)   199976-202441   CYP71D22 45% to 71D10

scaffold_122  (+)   221737-222360   CYP71D22P dup. 100% match to scaffold_122.5 exon 2

scaffold_123  (+)   684368-687253   CYP735A5 72% to 735A1, 91% to 735A6

scaffold_125  (-)   611455-6008432  CYP714A3 61% to 714A1

scaffold_127  (-)   281038-279097   CYP706B3 55% to 706B2

scaffold_127  (-)   288016-285624   CYP706C6 55% to 706C1

scaffold_130  (-)   112070-99249    CYP82C14P pseudogene 52% to 82C4

scaffold_130  (-)   704177-701738   CYP707A12v1 74% to 707A4

scaffold_142  (-)   468463-467483   CYP721A10P pseudogene

scaffold_142  (-)   531878-529641   CYP82L2 55% to 82G1

scaffold_150  (+)   437927-439595   CYP81S3 51% to 81D6

scaffold_150  (+)   506775-507275   CYP81S1v3

scaffold_150  (+)   551355-553284   CYP81S4 53% to 81D8

scaffold_150  (+)   562399-563313   CYP81S5P 52% to 81D6 exon 1 only

scaffold_150  (+)   567120-568973   CYP81S6 54% to 81D8

scaffold_152  (+)   143579-145208   CYP712A3v1 71% to 712A1

scaffold_152  (+)   146873-148630   CYP712C2 52% to 712A2

scaffold_152  (+)   154010-155780   CYP93A6 57% to 93D1

scaffold_152  (+)   158255-159380   CYP93A5P pseudogene 49% to 93D1

Scaffold_155  (+)   207254-210369   CYP85A3 68% to 85A1 Arab 90% to 85A1 Populus

scaffold_158  (-)    58842-57112    CYP92A17v1 72% to 92A9

scaffold_158  (-)    69821-67869    CYP92A18 61% to 92A9

scaffold_164  (-)   229701-227818   CYP716A9 59% to 716A1

scaffold_164  (-)   228000-227824   CYP716A9-de3b C-term frag.

Scaffold_164  (+)   432328-434026   CYP73A44 65% to 73A5, 66% to 73A42 and 73A43

scaffold_168  (-)   422324-421987   CYP72A44-de5d exon 5 partial

scaffold_168  (-)   433348-432950   CYP72A44-de5c exon 5 partial

scaffold_168  (-)   448326-445219   CYP72A44 intact

scaffold_168  (-)   450449-450213   CYP72A44-de5b exon 5 partial no model in JGI

scaffold_168  (-)   466085-463913   CYP72A43 intact

scaffold_168  (-)   532526-506314   CYP72A42v1 intact with large first intron

scaffold_168  (-)   534371-533954   CYP72A42-de5b exon 5 only

scaffold_170  (+)    28364-30438    CYP749A12P pseudogene 73% to CYP749A6

scaffold_173  (+)   109052-112871   CYP82J2P pseudogene no gene model in JGI

scaffold_184  (+)   330890-333481   CYP720A1 72% to 720A1 Arab. = ortholog

scaffold_202  (+)   109027-110710   CYP716C2v1 45% to 716A2

scaffold_205  (-)    34570-32904    CYP81S12v1 49% to 81D8

scaffold_205  (-)    68149-59691    CYP81S11 56% to 81D3 7kb intron

scaffold_215  (-)   197710-194686   CYP734A10 78% to 734A1 (= old 72B1) 88% to 734A9

scaffold_228  (-)    35436-34671    CYP71D24P exon 1 pseudogene

scaffold_228  (-)    39599-38903    CYP71D25P exon 1 pseudogene

scaffold_228  (-)   105939-104306   CYP71D26 45% to 71B23

scaffold_232  (+)   223237-225013   CYP728F1 43% to 728B3

scaffold_232  (+)   269360-269428   CYP728F1-se1[3] duplicate exon 3 of scaf_232

scaffold_236  (+)   135347-136367   CYP72A45P1 partial seq

scaffold_236  (+)   143286-145899   CYP72A45P2 partial seq

scaffold_236  (+)   154621-158825   CYP72A46P1 partial seq

scaffold_236  (+)   160492-160917   CYP72A46P2 partial seq

scaffold_236  (+)   177460-180461   CYP72A42v2 almost complete missing C-term

scaffold_256  (+)      532-1167     CYP76G-se1[2] exon 2 only

scaffold_256  (+)    26660-27136    CYP76G-se2[1]  N-term fragment

scaffold_256  (+)    32430-34839    CYP76G2 66% to 76G1

scaffold_256  (+)    67375-69789    CYP76G3 66% to 76G1

scaffold_256  (+)    78586-81678    CYP76G4 68% to 76G1

scaffold_256  (+)    98560-101256   CYP76G5 68% to 76G1

scaffold_279  (-)    99748-99595    CYP81R6-de2b pseudogene PKG to PERF region

scaffold_279  (-)    96174-94443    CYP81R6 43% to 81K1 43% to 81A6

scaffold_282  (-)     9453-7324     CYP749A15 99% (5aa diffs) to CYP749A1v1

scaffold_351  (+)        2-403      CYP736A5v2

scaffold_351  (+)    33771-34214    CYP736A-se4[1]

scaffold_351  (+)    36319-36393    CYP736A-se5[1] C-term frag.

scaffold_351  (+)    37523-38219    CYP736A7P2

scaffold_351  (+)   102433-102990   CYP736A4v2 2 aa diff to LG_VII (+) 4667173

scaffold_351  (+)   109005-109223   CYP736A-se6[1] N-term

scaffold_351  (+)   121370-121642   CYP736A10Pv2 no gene model at JGI

scaffold_397  (-)    54684-54058    CYP82C10P  100% match to scaffold_40 (-) 1533682

Scaffold_492  (-)    31117-27522    CYP94D23v2 64% to 94D2 missing N-term

scaffold_674  (-)     3785-1144     CYP721A7v2 partial duplicate of scaf_70 1518027

scaffold_710  (-)     1341-893      CYP71D38-de2b pseudogene 89% to 71D38

scaffold_710  (-)    19864-18128    CYP71D38 100% to 71D38, 50% to 726A1 euphorbia

scaffold_710  (-)    21263-20928    CYP71D38-de2c pseudogene 79% to 71D38

scaffold_724  (+)     1454-2065     CYP71D45P 2 aa diffs to 71D31P 95% to 71D29 exon 2

scaffold_724  (+)    13518-14366    CYP71D46P 97% to 71D29 exon 1

Scaffold_732  (-)    11570-10047    CYP94A10 96% to 94A9v1 68% to 94A4

scaffold_738  (-)        1-961      CYP72A48P 3aa diffs to CYP72A43

scaffold_738  (-)    21070-17525    CYP72A47 96% to CYP72A43 intact seq

scaffold_751  (-)     7968-5543     CYP87D1 45% to 87A2 new subfamily in CYP87?

scaffold_796  (+)     8760-12990    CYP706D2 49% to 706A5

scaffold_816  (-)     1920-927      CYP81S2 partial seq

scaffold_816  (-)    15204-14722    CYP81S1v2

scaffold_829  (-)   131153-128927   CYP82C9 50% to 82C4

scaffold_974  (-)      388-347      CYP716D2v3 END OF EXON 1

scaffold_974  (-)      738-406      CYP716D2v2 EXON 1

scaffold_974  (-)     5460-5371     CYP716D3-de1bv2 partial exon 1 pseudogene

scaffold_974  (-)     5654-5544     CYP716D3v2 partial exon 4 pseudogene

scaffold_994  (+)     9952-10569    CYP71B40v2 exon 2 duplicate seq.

scaffold_1047 (+)     3473-5320     CYP81B6 51% to 81D3

scaffold_1047 (+)     8471-9091     CYP81B6P

scaffold_1047 (+)    16009-16578    CYP81B3v2 no gene model at JGI

scaffold_1142 (-)    11129-8104     CYP92A23P pseudogene

scaffold_1182 (+)    2410-3939      CYP89A15v1 64% to 89A5

scaffold_1240 (-)    6280-5579      CYP71AN2v2 98% to 71AN2, 3 aa diffs, duplicate?

Scaffold_1297 (-)    11956-10436    CYP96A16v2 55% to 96A10, 1aa diff to CYP96A16v1

scaffold_1365 (-)    11307-10612    CYP74C7 C-term identical to 74C7

scaffold_1365 (-)    14922-15488    CYP74C6v2 100% to CYP74C6v1 probable duplicate

scaffold_1387 (-)     6082-5135     CYP78D3v2 1 aa diff to LG_I 3922062

scaffold_1454 (+)     1851-5548     CYP98A24 76% to 98A3

Scaffold_1479 (+)     6988-8586     CYP86C5v1 61% to CYP86C1, no introns 89% to 86C6

scaffold_1517 (-)     4845-4513     CYP71D29-se1d 97% to 71D29 N-term 100% scaf_19234

scaffold_1517 (-)     9207-8703     CYP71D36Pv2 3 aa diffs to 71D36P, duplicate seq.

scaffold_1564 (+)     2035-2163     CYP82C12P1-de2b C-term pseudogene fragment

scaffold_1564 (+)     5393-6497     CYP82C12P1

scaffold_1585 (-)     9137-7275     CYP79D6v2 only 2aa diffs to 79D6 poss. duplicate

Scaffold_1594 (-)     4660-3013     CYP83F4 97% to 83F1, 72% to 83F2, 63% to 83F5

scaffold_1594 (-)    10925-10809    CYP83F4-de2b C-terminal duplication of CYP83F4

scaffold_1691 (-)     2042-808      CYP89A15v2

scaffold_1694 (+)     5956-6849     CYP716A11P pseudogene last two exons only

scaffold_1745 (-)     1715-1245     CYP736A8v3 100% to LG_VII (+) 4834273

scaffold_1746 (+)     4438-6971     CYP721A2v2 52% to 721A1 100% to LG_II 24440445

scaffold_1769 (-)     9485-8871     CYP736A3v2

scaffold_1813 (+)     7926-8444     CYP71D29 duplicate seq 100% match

scaffold_1911 (+)     7175-8184     CYP71D25Pv2 2 aa diffs to v1

scaffold_1954 (-)     5819-5235     CYP89A21P

scaffold_1991 (+)     5336-7335     CYP729A4P 94% duplicate of CYP729A3v1?

scaffold_1994 (-)     5560-3035     CYP93B8v2 46% TO 93C1v1 soybean

scaffold_2001 (-)     7180-4247     CYP72A42v3

scaffold_2146 (+)     6463-8244     CYP715A2 59% to 715A1 duplicate sequence

scaffold_2179 (+)     3774-4172     CYP92A22P middle

scaffold_2240 (-)      487-3        CYP71D28v2 1 aa diff to CYP71D28v1

scaffold_2379 (-)      106-381      CYP72D2 exon 1 only

scaffold_2390 (-)     7318-5629     CYP78A21v2 69% to 78A7

scaffold_2410 (+)     3342-5208     CYP81S1v1 43% to 81A6

Scaffold_2425 (+)      683-2206     CYP94A9v1 67% to 94A4, 1 aa diff to CYP94A9v2

scaffold_2741 (-)     1250-743      CYP83F5-de2bv2 100% match to LG_V  (-) 16414413

scaffold_2789 (+)     2508-4492     CYP82C15v2 51% to 82C4

scaffold_2810 (-)     1236-1        CYP102E1 46% to S. bicolor ESTs Bacterial cont.

scaffold_3616 (+)        3-478      CYP98A26

scaffold_3616 (+)     3009-5285     CYP98A25 74% to 98A3

scaffold_3645 (-)     4941-3651     CYP78A26P PSEUDOGENE 64% to 78A10

scaffold_3771 (-)     2060-330      CYP92A17v2 71% to 92A9

Scaffold_4331 (+)     1256-3864     CYP704A16 96% to 704A12, same seq?

scaffold_4500 (-)     2247-1907     CYP704A10-se5b6b pseudogene 1aa diff to 704A10

scaffold_4500 (-)     3903-3733     CYP71D40 100% match

Scaffold_4631 (-)     3310-1881     CYP74C6v3 79% to CYP74C8

scaffold_4672 (-)     2892-1263     CYP712A3v2 71% to 712A1

scaffold_4756 (-)     3708-3244     CYP705B4P pseudogene 1aa diff to LG_IX (+) 6358443

scaffold_5333 (-)       49-388      CYP707A12v2 100% to scaf_130

scaffold_5464 (-)     3066-2671     CYP81S14v2

scaffold_5479 (+)     1092-2785     CYP82C13P partial seq

scaffold_5606 (-)     1564-608      CYP82C9P2 2 aa diffs to scaffold_829

Scaffold_5798 (-)     1307-530      CYP704A12P identical to LG_XII 13549852

scaffold_5854 (+)      673-2263     CYP76T6 51% to 76C4

scaffold_5894 (-)     2108-2        CYP82C8P1 47% to 82C4

scaffold_6719 (-)     2305-1486     CYP728D7v2 40% to 716A2 partial

scaffold_6967 (-)     2023-1561     CYP71D36Pv3 100% to 71D36Pv2

scaffold_7045 (+)     1877-1981     CYP82C-se5[2] no gene model at JGI

scaffold_7290 (+)     1373-2155     CYP82C11P1 100% to scaffold_40 (-) 1522560

scaffold_7597 (-)     1871-37       CYP87D2v2 14 aa diffs to scaffold_751

scaffold_8029 (+)        1-257      CYP89A16P no gene model at JGI

scaffold_9149 (-)        1-618      CYP89A19P

scaffold_9254 (+)     1134-1760     CYP749A1v2 1 aa diff to CYP749A1v1

scaffold_9416 (-)      764-3        CYP71AP2v2 duplicate seq

scaffold_9456 (-)        2-691      CYP716C3 80% to scaf_202, 45% to 716A1

scaffold_9774 (+)        1-887      CYP716C2v2 54% to 716A1

scaffold_10588 (+)       2-1138     CYP81B13P

scaffold_11555 (-)    1500-306      CYP81S12v2 51% to 81D8

scaffold_11610 (-)    1395-784      CYP71D47 96% to 71D34 exon 2 only

scaffold_11900 (-)    1401-309      CYP39 vertebrate seq contamination

scaffold_12583 (+)     457-1149     CYP87D-se1[4:5:6:7] 46% to 87B3 pseudogene

scaffold_12820 (-)     312-52       CYP80C-se1[1] N-term no gene model at JGI

scaffold_13620 (-)    1352-2        CYP82C11P2 52% to 82C4 no gene model at JGI

scaffold_14645 (+)    312-730       CYP728F1-se2[3:4]v2 pseudogene 49% to 728C1

scaffold_14699 (-)     294-1        CYP72A42v4 no gene model at JGI

scaffold_15402 (+)     209-760      CYP82C7Pv2

scaffold_15445 (+)       1-348      CYP89A24P

scaffold_16034 (+)       2-547      CYP83F3-se3[2] 94% to CYP83F3v1

scaffold_16122 (-)     481-1221     CYP83F3v2 45% to 83A2 3aa diffs to CYP83F3v1

scaffold_16661 (+)     808-1197     CYP736A8v2 1aa diff to LG_VII (+) 4873686-4875265

scaffold_18069 (+)       2-552      CYP89A15v3 100% to scaf 1691 and scaf 1182

scaffold_18213 (+)     303-1138     CYP82C12P2

scaffold_18730 (+)     986-1117     CYP711A2 identical to LG_XVIII 711A2 seq.

scaffold_18933 (+)     920-1111     CYP71D29-se1c no gene model at JGI

scaffold_19234 (-)     368-1        CYP71D29-se1b no gene model at JGI

scaffold_19450 (-)       3-596      CYP736A8v4 duplicate seq.

scaffold_19769 (+)     488-1081     CYP89A20P runs off end

scaffold_20448 (+)     647-1056     CYP82C15v3

scaffold_21067 (+)     515-913      CYP98A25