Mouse Cytochrome P450s

Note May 15, 2007. This page is under revision. The old links to Locus Link have been replaced by new links to Entrez Gene. Many old Unigene entries were retired. These have all been updated. I have added links to P450 gene cluster maps in column 1. The gene names in column 1 are now linked to the protein sequences.

Be aware that some Refseq sequences are not complete. You may want to use my linked protein sequences from column 1.

The UCSC links and nucleotide numbering are from version mm8 Feb. 2006 assembly.

I have made links to the UCSC Genome Browser for each entry. These links usually cover the gene or pseudogene and some surrounding context.

I will continue work on updating this page. The links in cols 2,3 and 5 are now fixed.

I have incorporated more than 1000 links in this table to make access to P450 data on mouse P450s easier. Currently there are 103 full length P450s and 82 pseudogenes. The 3a gene cluster has been revised and a new Cyp3a41b gene was found. I have tried to make this table as up to date as possible. Unigene links have been checked and updated.

Some of the automatically generated annotations by Gnomon are incorrectly translated as in Cyp4f37/4f38p XM_139866 and Cyp26b1 XP_149752. Some of these have not been labeled, so beware. See my paper on Frankenstein genes that discusses this problem. It is a good idea to consult the links under col 1 or the FASTA file of mouse sequences.

This page was revised Jan. 31, 2003. David Nelson

This page was last revised May 15, 2007

Pseudogenes are named using suffixes to specify the four types of pseudogenes defined as:

P is a full length or near full length pseudogene, it may be near or far from other P450s.

-ps is equivalent to P, but it is required nomenclature for mouse full length pseudogenes.

-de stands for detritus exons (found near other full length genes).

-de1b2b stands for a second exon 1 and exon 2 found near the parent gene. -de1c2c stands for a third exon 1 and exon 2 found near the parent gene.

-se stands for solo exons, one or a few exons found distant from a P450 gene.

The numbers in the brackets [1:2:3] refer to exons found in the pseudogene.

-ie stands for internal exons, duplicate exons found inside some P450 genes.

CYP

Genbank

RefSeq mRNA

RefSeq Genomic

RefSeq Protein

UCSC browser

Unigene

Entrez Gene

comments

1a1

multiple, see also related sequences under Entrez Gene link

NM_009992

See reference assemblies under the Entrez gene link

NP_034122

Cyp1a1 and 1a2

Mm.14089 (54 ESTs)

13076

Chr 9qB 57498228- 57501013 (+) strand

1a2

multiple, see also related sequences under Entrez Gene link

NM_009993

See reference assemblies under the Entrez gene link

NP_034123

Cyp1a1 and 1a2

Mm.15537 (136 ESTs)

13077

Chr 9qB 57475368- 57480666 (-) strand

1b1

multiple, see also related sequences under Entrez Gene link

NM_009994

See reference assemblies under the Entrez gene link

NP_034124

Cyp1b1

Mm.214016 (174 ESTs)

13078

Chr 17qE3 79618422- 79622637 (-) strand

2a4

2ABFGST gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_009997

See reference assemblies under the Entrez gene link

NP_034127

Cyp2a4, between Cyp2b9 and Nlrp9c

Mm.154643 (60 ESTs)

13086

Chr 7qA3 26015978- 26023641 (+) strand

2a4-de7b

hold

hold

hold

hold

~15 kb upstream of 2a4

hold

hold

Chr 7qA3 26001156- 26001332 (+) strand

2a5

multiple, see also related sequences under Entrez Gene link

NM_007812

See reference assemblies under the Entrez gene link

NP_031838

downstream of 2g1

Mm.389848 (190 ESTs)

13087

Chr 7qA3 26544124- 26551816 (+) strand

2a12

multiple, see also related sequences under Entrez Gene link

NM_133657

See reference assemblies under the Entrez gene link

NP_598418

upstream of 2f2

Mm.20770 (72 ESTs)

13085

Chr 7qA3 26737866- 26745403 (+) strand

2a12-de1b2b

AC157553.10 from 140988 to 141528

no entry

NT_039413.6 from 6853819 to 6854346 (-) strand

NW_000310.1 from 52646 to 53173 (-) strand

no entry

~12 kb downstream of 2a12

no entry

no entry

Chr 7qA3 26757258- 26757785 (-) strand, old Cyp2a20-ps

2a21-ps

XM_286199

XM_286199

See reference assemblies under Entrez Gene link

XP_286199

~7 kb upstream of 2a22

Mm.425396 (0 ESTs)

EG330491

Chr 7qA3 26654711- 26659923 (+) strand, fragment t in map

2a22

AK149509 retains intron 4

XM_896592 incorrect splice at intron 4

See reference assemblies under Entrez Gene link

XP_901685 incorrect splice at intron 4

between 2a5 and 2a21-ps

Mm.291574

233005

633450

Chr 7qA3 26641114- 26648119 (-) strand

2a22-de1b2b

hold

hold

hold

hold

between 2a5 and 2a22

hold

hold

Chr 7qA3 26626154- 26626681 (+) strand, old 2a23-ps, fragment u in map

2b9

2ABFGST gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_010000

See reference assemblies under the Entrez gene link

NP_034130

between Cyp2b13 and Cyp2a4

Mm.14413 (33 ESTs)

13094

Chr 7qA3 25882194- 25919041 (+) strand

2b9-de9b

XM_145463 removed

XM_145463 removed

No entry

XP_145463.1 removed

~24kb downstream of Cyp2b9

no entry

no entry

Chr 7qA3 25943231- 25943414 (-) strand, fragment x in mapold Cyp2b25-ps

2b10

M21856

AK028103

NM_009998 incorrect

See reference assemblies under the Entrez gene link

NP_034128 incorrect

between Cyp2s1 and Cyp2b28-ps

Mm.218749 (28 ESTs) see 2b20X

13088 merge with 2b20X

Chr 7qA3 25606445- 25635006 (+) strand, the sole mRNA for the original Cyp2b10 seq. M21856, contains errors. See AK028103 for the correct sequence.

2b13

multiple, see also related sequences under Entrez Gene link

NM_007813

See reference assemblies under the Entrez gene link

NP_031839

between Cyp2b10 and Cyp2b9

Mm.389847 (42 ESTs)

13089

Chr 7qA3 25770280- 25804578 (+) strand

2b13-de1b2b7b

hold

hold

See reference assemblies under the Entrez gene link

hold

~11 kb downstream of Cyp2b13

hold

EG667960

Chr 7qA3 25815610- 25819835 (+) strand, fragment y in map

2b19

AF047529

NM_007814

See reference assemblies under the Entrez gene link

NP_031840

between 2b23 and 2g1

Mm.14098 (14 ESTs)

13090

Chr 7qA3 26465947- 26480171 (+) strand

2b19-de7b8b9b

XM_145467 removed

XM_145467 removed

no entry

XP_145467.1 removed

~11 kb upstream of 2b19

no entry

no entry

Chr 7qA3 26447307- 26454644 (+) strand, old Cyp2b24-ps, fragment v in map

2b20X

multiple, see also related sequences under Entrez Gene link

no entry

See reference assemblies under the Entrez gene link

AK028103

between Cyp2s1 and Cyp2b28-ps, = 2b10

Mm.218749 (28 ESTs)

13091 was merged with 2b10

2b10 and 2b20 are the same gene. The only 2b10 mRNA seq. has errors

2b23

NM_001081148

NM_001081148

See reference assemblies under the Entrez gene link

NP_001074617

~70 kb upstream of 2b19, EG243881

Mm.294678 (2 ESTs)

EG243881

Chr 7qA3 26374696- 26395190 (-) strand

2b26-ps

AC087157.1 from 22369 to 25229 (+) strand. Exons 4,5,6 only

XR_002107

See reference assemblies under the Entrez gene link

no entry

~39 kb downstream of 2b13

Mm.409766 (0 ESTs)

EG623532

Chr 7qA3 25843515- 25857343 (-) strand

2b27-ps

XM_145461 removed

XM_145461 removed

See reference assemblies under the Entrez gene link

XP_145461 removed

~78 kb downstream of 2b10

Mm.409766 (0 ESTs)

EG667957

Chr 7qA3 25713368- 25737657 (-) strand

2b28-ps

XM_133252.2 removed

XM_133252.2 removed

See reference assemblies under the Entrez gene link

XP_133252.1 removed

~24 kb downstream of 2b10

no entry

LOC232993

Chr 7qA3 25659013- 25695078 (+) strand

2c29

2C gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_007815

See reference assemblies under the Entrez gene link

NP_031841

between 2c53-ps and 2c38

Mm.20764 (206 ESTs)

13095

Chr 19qC3 39340429- 39383741 (+) strand

2c37

multiple, see also related sequences under Entrez Gene link

NM_010001

See reference assemblies under the Entrez gene link

NP_034131

downstream of 2c54

Mm.38963 (149 ESTs) = 2c37 + 2c50

13096

Chr 19qC3 40045751- 40065216 (+) strand

2c38

AF047725

NM_010002

See reference assemblies under the Entrez gene link

NP_034132

between 2c39 and 2c29

Mm.42100 (5 ESTs)

13097

Chr 19qC3 39444245- 39516365 (-) strand

2c39

AF047726

NM_010003

See reference assemblies under the Entrez gene link

NP_034133

between 2c38 and 2c67 (730004C24Rik)

Mm.42101 (8 ESTs)

13098

Chr 19qC3 39564182- 39621502 (+) strand

2c39-ie6b

hold

hold

hold

hold

inside 2c39 just after exon 6

hold

hold

Chr 19qC3 note this seq is missing in the UCSC browser mm8 assembly, but it is in NW_000145.1 alternate assembly based on MGSCv3

2c40

AF047727

NM_010004

See reference assemblies under the Entrez gene link

NP_034134

between 2c68 (9030012A22Rik) and 2c69

Mm.358585 (42 ESTs)

13099

Chr 19qC3 39742383- 39866033 (-) strand, ESTs may be from 2c40, 67, 68 and 69

2c44

multiple, see also related sequences under Entrez Gene link

NM_001001446

See reference assemblies under the Entrez gene link

NP_001001446

3.8 Mb outside the main 2c cluster, on the telomeric side

Mm.329866 (79 ESTs)

Mm.435674 (2 ESTs on 3 prime UTR)

226143

Chr 19qC3 44058755- 44082498 (-) strand

2c50

BC011222.1

NM_134144

See reference assemblies under the Entrez gene link

NP_598905

between 2c54 and 2c70

Mm.38963 (149 ESTs) = 2c37 + 2c50

107141

Chr 19qC3 40143011- 40166923 (+) strand

2c51X

no entry

no entry

no entry

no entry

no entry

no entry

no entry

probable combination of 2c52-ps and 2c69

2c52-ps

XR_002577

XM_140720

See reference assemblies under the Entrez gene link

XP_140720

on the centromeric side of the 2c cluster, upstream of 2c55

Mm.480082 (0 ESTs)

LOC209753

Chr 19qC3 39041860- 39068329 (+) strand

2c53-ps

AY227735

XM_915223

See reference assemblies under the Entrez gene link

XP_920316

between 2c66 and 2c29

no entry

EG638988

Chr 19qC3 39282595- 39328002 (+) strand

2c54

see related sequences under Entrez Gene link

NM_206537

See reference assemblies under the Entrez gene link

NP_996260

between 2c37 and 2c50

Mm.379575 (45 ESTs)

404195

LOC639023

Chr 19qC3 40091551- 40127122 (-) strand

2c55

multiple, see also related sequences under Entrez Gene link

NM_028089

See reference assemblies under the Entrez gene link

NP_082365

between 2c52-ps and 2c65

Mm.142581 (38 ESTs)

72082

Chr 19qC3 39072090- 39107239 (+) strand

2c65

multiple, see also related sequences under Entrez Gene link

NM_028191

See reference assemblies under the Entrez gene link

NP_082467

between 2c55 and 2c66

Mm.271190 (14 ESTs) mRNA AK008512 = 2c66, not 2c65

72303

Chr 19qC3 39126074- 39158545 (+) strand

2c65-de9b

hold

hold

hold

hold

1.5 kb downstream of 2c65

hold

hold

Chr 19qC3 39160000- 39160146 (+) strand, fragment z on map

2c66

multiple, see also related sequences under Entrez Gene link

NM_001011707

See reference assemblies under the Entrez gene link

NP_001011707

between 2c65 and 2c53-ps

Mm.426077 (1 EST), mRNA AY227734.1 is correct but EST AA272365.1 = 2c65

69888

Chr 19qC3 39178973- 39239938 (+) strand

2c67

see related sequences under the Entrez Gene link

NM_001024719

NT_039687.6 from 32781729 to 32821682 (-) strand. See reference assemblies under Entrez Gene

NP_001019890

Cyp2c67, adjacent to 2c39, 730004C24Rik

Mm.297048 (34 ESTs)

Cyp2c67, LOC545288

Chr 19qC3, downstream of 2c39

2c68

BC019468.1 and related sequences under Entrez Gene link

NM_001039555

NT_039687.6 from 32861721 to 32913693 (-) strand. See reference assemblies under Entrez Gene

NP_001034644

Cyp2c68, downstream of 2c40, 9030012A22Rik

Mm.335660 (99 ESTs)

2c68 9030012A22Rik

Chr19qC3

between 2c67 and 2c40

2c69

multiple, see also related sequences under Entrez Gene link

XM_001002877

NT_039687.7 from 33015544 to 33059359 (-) strand.

XP_001002877

Cyp2c69, between 2c40 and 2c37

Mm.353875 (14 ESTs)

note: XP_001002871.1, XP_001002877.1, XP_001002844.1 and XP_001002856.1 = Cyp2c69

Cyp2c69 on Chr 19qC3 between 2c37 and 2c40

2c70

multiple, see also related sequences under Entrez Gene link

NM_145499

See reference assemblies under the Entrez gene link

NP_663474

on the telomeric edge of the 2c cluster, downstream of 2c50

Mm.29119 (177 ESTs)

226105

Chr 19qC3 40206890- 40240573 (-) strand

2c71-ps

AC116744.8 from 68065 to 68235 (-) strand,

XM_271583 incorrect translation

NT_039687.7 from 33114429 to 33139246 (+) strand

no entry

between 2c69 and 2c37

no entry

no entry

Chr 19qC3 39981355- 40006172 (+) strand

2c71-ps-de1b

hold

hold

NT_039687.7 from 33108493 to 33108660 (-) strand

hold

between 2c69 and 2c37

hold

hold

Chr 19qC3 39975419- 39975586 (-) strand, fragment x in map

2c72-ps

AC139233.10 from 152144 to 165171 (-) strand,

XM_140723 removed

NT_039687.7 from 32533752 to 32546779 (+) strand, missing exon 3

XP_140723 removed

between 2c29 and 2c38

no entry

209766 discontinued

Chr 19qC3 39400678- 39413705 (+) strand

2c73-ps

AC130547.5 from 45011 to 45708 (-) strand,

no entry

NT_039606.7 from 54204899 to 54205712 (+) strand

No entry

Cyp2c73-ps, no close neigboring genes

no entry

no entry

Chr 14qD3 80104203- 80105016 (+) strand

2c-se5[9]

hold

hold

hold

hold

inside an intron of the BC016579 gene

hold

hold

Chr 16qB5 45561689- 45561835 (+) strand

2d9

2D gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_010006

See reference assemblies under the Entrez gene link

NP_034136

~46 kb upstream of 2d10 with three pseudogenes between

Mm.378904 (334 ESTs)

13105

Chr 15qE1 82280216- 82284527 (+) strand

2d9-de1b2b

hold

hold

hold

hold

~8 kb upstream of 2d9

hold

hold

Chr 15qE1 82271244- 82272420 (+) strand, fragment x in map

2d9-de1c5c6c7c

hold

hold

hold

hold

~16 kb upstream of 2d9

hold

hold

Chr 15qE1 82261289- 82264339 (+) strand, fragment y in map

2d9-de1d6d7d

hold

hold

hold

hold

~14 kb upstream of 2d10

hold

hold

Chr 15qE1 82249215- 82251211 (-) strand, fragment z in map

2d10

multiple, see also related sequences under Entrez Gene link

NM_010005

See reference assemblies under the Entrez gene link

NP_034135

~9 kb upstream of 2d11

Mm.174372 (237 ESTs)

13101

Chr 15qE1 82230673- 82234886 (-) strand

2d11

M24264

no entry

See reference assemblies under the Entrez gene link

AAA37514.1

~13 kb upstream of 2d22

no entry

13102

Chr 15qE1 82216921- 82221711 (-) strand

2d12

multiple, see also related sequences under Entrez Gene link

no entry

See reference assemblies under the Entrez gene link

no entry

~57 kb downstream of 2d34

no entry

109921

Chr 15qE1 82382913- 82387116 (+) strand

2d12-de1b5b6b7b

hold

hold

hold

hold

~6 kb upstream of 2d12 (9030605E09Rik)

hold

hold

Chr 15qE1 82373373- 82376412 (-) strand, fragment v in map

2d12-de5c6c7c

hold

hold

hold

hold

~45 kb upstream of 2d12 (9030605E09Rik)

hold

hold

Chr 15qE1 82336830- 82337641 (+) strand, fragment w on map. Note: discrepancy with map, distance and orientation do not agree. Map needs revision.

2d13

multiple, see also related sequences under Entrez Gene link

NM_133695.1

See reference assemblies under the Entrez gene link

NP_598456

~16 kb upstream of 2d34 (BC018285)

Mm.352895 (314 ESTs) combined 2d37-ps, 2d26, 2d40 and 2d13

68444

Chr 15qE1 82464589- 82469739 (-) strand

2d22

multiple, see also related sequences under Entrez Gene link

NM_019823

See reference assemblies under the Entrez gene link

NP_062797

between Ndufa6 and Cyp2d11, on the centromeric edge of the 2d gene cluster

Mm.157435 (142 ESTs)

56448

Chr 15qE1 82199314- 82203745 (-) strand

2d26

multiple, see also related sequences under Entrez Gene link

NM_029562

See reference assemblies under the Entrez gene link

NP_083838

~7 kb upstream of Cyp2d41-ps, on the telomeric edge of the 2d gene cluster, next gene is Tcf20 ~16kb upstream

Mm.352895 (314 ESTs) combined 2d37-ps, 2d26, 2d40 and 2d13

76279

Chr 15qE1 82617946- 82621939 (-) strand

2d26-de1b7b8b

hold

hold

hold

hold

~7 kb upstream of Cyp2d26 on the telomeric edge of the 2d gene cluster, next gene is Tcf20 ~6kb upstream

hold

hold

Chr 15qE1 82628981- 82631742 (-) strand, fragment s in map

2d32-ps

AC113593.14 from 158169 to 160663 (+) strand,

XM_194978 removed

NT_039621.7 from 43579053 to 43581547 (+) strand

XP_194978 removed

~6 kb downstream of 2d9

no entry

no entry

Chr 15qE1 82290383- 82292877 (+) strand

2d33-ps

AC118710.7 from 148881 to 152211 (-) strand,

hold

NT_039621.7 from 43678646 to 43681976 (+) strand

hold

~2 kb downstream of 2d12 (9030605E09Rik)

hold

hold

Chr 15qE1 82389978- 82393296 (+) strand

2d34

BC018285

NM_145474

See reference assemblies under the Entrez gene link

NP_663449

~16 kb downstream of 2d13

Mm.436843 (30 ESTs)

223706

Chr 15qE1 82443791- 82448623 (-) strand

2d34-de1b2b7b8b

hold

hold

hold

hold

~3kb downstream of 2d34 (BC018285)

hold

hold

Chr 15qE1 82436961- 82440661 (-) strand, fragment u in map

2d35-ps

hold

hold

NT_039621.6 from 43765166 to 43769962 (-) strand

hold

~8 kb upstream of 2d13

hold

EG667220 has both 2d35-ps and 2d36-ps

Chr 15qE1 82477690- 82482463 (-) strand

2d36-ps

hold

hold

NT_039621.6 from 43786527 to 43798499 (-) strand

hold

~17 kb upstream of 2d35-ps

hold

EG667220 has both 2d35-ps and 2d36-ps

Chr 15qE1 82499051- 82511023 (-) strand

2d37-ps

hold

hold

See reference assemblies under the Entrez gene link

hold

~5 kb upstream of 2d36-ps

Mm.352895 (314 ESTs) combined 2d37-ps, 2d26, 2d40 and 2d13

LOC627860

Chr 15qE1 82516617- 82520767 (-) strand

2d38-ps

hold

XM_989159

See reference assemblies under the Entrez Gene link

XP_994253

~13 kb upstream of 2d37-ps

hold

EG667225

Chr 15qE1 82533341- 82535036 (-) strand

2d39-ps

AC087902.43 from 87538 to 90950 (-) strand,

hold

NT_039621.6 from 43831246 to 43834658 (-) strand

hold

~8 kb upstream of 2d38-ps

hold

hold

Chr 15qE1 82543770- 82547182 (-) strand

2d40

BC061152, incomplete cDNA

NM_023623

See reference assemblies under the Entrez Gene link

NP_076112

2d40 = 1300013D18Rik

Mm.352895 (314 ESTs) combined 2d37-ps, 2d26, 2d40 and 2d13

71754, 1300013D18Rik

Chr 15qE1 82587675- 82591876 (-) strand

2d40-de7b9b

hold

hold

hold

hold

~17 kb downstream of 2d40 (1300013D18Rik)

hold

hold

Chr 15qE1 82569573- 82569883 (-) strand, fragment t in map

2d41-ps

hold

hold

See reference assemblies under the Entrez gene link

hold

between 2d40 (1300013D18Rik) and 2d26

hold

LOC271300

Chr 15qE1 82605700- 82609876 (-) strand

2d-se1[1:8:9]

hold

hold

hold

hold

between Pmm1 and 1700029P11Rik, ~404 kb from 2d gene cluster

hold

hold

Chr 15qE1 81794242- 81795798 (+) strand

2e1

multiple, see also related sequences under Entrez Gene link

NM_021282

See reference assemblies under the Entrez gene link

NP_067257

Cyp2e1

Mm.21758 (915 ESTs)

13106

Chr 7

2f2

2ABFGST gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_007817

See reference assemblies under the Entrez gene link

NP_031843

~22 kb upstream of Cyp2t4

Mm.4515 (496 ESTs)

13107

Chr 7qA3 26830331- 26842154 (+) strand

2g1

L81171

NM_013809

See reference assemblies under the Entrez gene link

NP_038837

between 2b19 and 2a5

Mm.102312 (24 ESTs)

13108

Chr 7qA3 26517687- 26529586 (+) strand

2j5

2J gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_010007

See reference assemblies under the Entrez gene link

NP_034137

between 2j9 and LOC620779, on the telomeric edge of the Cyp2j gene cluster

Mm.12838 (262 ESTs) 2j5 + 2j9

13109

Chr 4qC5 96121489- 96156028 (-) strand

2j5-de2b

hold

hold

hold

hold

~13 kb downstream of 2j5

hold

hold

Chr 4qC5 96107879- 96108027 (-) strand, fragment q in map

2j5-de9b

hold

hold

hold

hold

~23 kb downstream of 2j5

hold

hold

Chr 4qC5 96098064- 96098239 (-) strand, fragment r in map

2j6

multiple, see also related sequences under Entrez Gene link

NM_010008

See reference assemblies under the Entrez gene link

NP_034138

between 2j8 and 2j9

Mm.98200 (118 ESTs)

13110

Chr 4qC5 96010048- 96045469 (-) strand

2j6-de6b

hold

hold

hold

hold

~2 kb downstream of 2j6

hold

hold

Chr 4qC5 96008071- 96008187 (-) strand, fragment s in map

2j7

AF218856

XM_143894.1 removed

NT_039280.5 from 6849183 to 6890642 (-) strand

XP_143894 removed

between 2j12 and 2j11

no entry

337922

Chr 4qC5 95687218- 95728677 (-) strand

2j7-de9b

NW_000210

XM_143893 3 C-terms

NT_039263.1

XP_143893

~5 kb downstream of 2j7

no entry

230460

Chr 4qC5 95682092- 95682260 (-) strand, fragment w in map

2j7-de9c

NW_000210

XM_143893 3 C-terms

NT_039263.1

XP_143893

~25 kb downstream of 2j7

no entry

230460

Chr 4qC5 95662228- 95662404 (-) strand, fragment x in map

2j7-de9d

NW_000210

XM_143893 3 C-terms

NT_039263.1

XP_143893

~44 kb downstream of 2j7

no entry

230460

Chr 4qC5 95643674- 95643850 (-) strand, fragment y in map

2j8

AF218857

=XM_974565

See reference assemblies under the Entrez gene link

XP_979659

between 2j11 and 2j6

no entry AI429871

337923

LOC665095

Chr 4qC5 95936617- 95999404 (-) strand

2j8-de2b

hold

hold

hold

hold

~13 kb downstream of 2j8

hold

hold

Chr 4qC5 95923426- 95923581 (-) strand, fragment t in map

2j8-de9b

hold

hold

hold

hold

~24 kb downstream of 2j8

hold

hold

Chr 4qC5 95912136- 95912225 (-) strand, fragment u in map

2j8-de9c

hold

hold

hold

hold

~28 kb downstream of 2j8

hold

hold

Chr 4qC5 95908698- 95908853 (-) strand, fragment v in map

2j9

multiple, see also related sequences under Entrez Gene link

NM_028979

See reference assemblies under the Entrez gene link

NP_083255

between 2j6 and 2j5

Mm.12838 (262 ESTs) 2j5 + 2j9

74519

Chr 4qC5 96060748- 96083363 (-) strand

2j11

NM_001004141

NM_001004141

See reference assemblies under the Entrez gene link

NP_001004141

in the middle of the 2j gene cluster, between 2j7 and 2j8

Mm.26915 (37 ESTs)

100066

Chr 4qC5 95786839- 95840585 (-) strand

2j12

NW_000210

XM_143892

See reference assemblies under the Entrez gene link

XP_143892

between 2j13 and 2j7

Mm.302562 (6 ESTs)

242546

Chr 4qC5 95591664- 95633060 (-) strand

2j13

BC016446 incomplete

NM_145548

See reference assemblies under the Entrez gene link

NP_663523

between Hook1 and 2j12, on the centromeric edge of the 2j gene cluster

Mm.268175 (33 ESTs)

230459

Chr 4qC5 95537471- 95569486 (-) strand

2j13-de8b

no entry

no entry

No entry

no entry

~7 kb downstream of 2j13

no entry

no entry

Chr 4qC5 95530276- 95530416 (-) strand, fragment z in map

2j14-ps

AL807390.11 from 19138 to 20072 (-) strand, exons 3,4

AL772157.4 from 101398 to 101566 (-) strand, exon 9

XM_143896 removed

NT_039280.5 from 7010232 to 7034199 (-) strand

XP_143896 removed

~8 kb upstream of 2j11

no entry

no entry

Chr 4qC5 95848267- 95872234 (-) strand

2j15-ps

AL772395.12 from 171968 to 177123 (-) strand, exons 5,9

AL772157.4 from 18916 to 19420 (-) strand, exons 3,4

hold

NT_039280.5 from 6899546 to 6928254 (-) strand

hold

between 2j7 and 2j11

hold

hold

Chr 4qC5 95737581- 95766289 (-) strand

2r1

AK050453.1

NM_177382

See reference assemblies under the Entrez gene link

NP_796356

between pde3b and Calca

Mm.108037 (10 ESTs)

244209

Chr 7qF1 114341456- 114354138 (-) strand

2s1

2ABFGST gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_028775

See reference assemblies under the Entrez gene link

NP_083051

Adjacent to Axl on the centromeric edge of the CYP2abfgst gene cluster

Mm.275188 (183 ESTs)

74134

Chr 7qA3 25512326- 25525262 (-) strand

2s1-ie4b

hold

hold

hold

hold

partial duplicate of Cyp2s1 exon 4 between exons 3 and 4

no entry

no entry

Chr 7qA3 inside Cyp2s1 gene (+) strand

2t4

AC073713

XM_991088

NT_039413.6 from 6960442 to 6963882 (+) strand

XP_996182

between Cyp2f2 and Egln2, on the telomeric edge of the CYP2abfgst gene cluster

no entry, no mRNAs, no ESTs. ESTs are found in rat, dog and cow

384706

Chr 7qA3 26863881- 26867321 (+) strand, only 595 bp to Egln2 CDS

2u1

multiple, see also related sequences under Entrez Gene link

NM_027816

See reference assemblies under the Entrez gene link

NP_082092

between Hadhsc and Sgms2

Mm.243855 (25 ESTs)

Mm.438620 (3 ESTs)

71519

Chr 3qG3 131282670- 131292282 (-) strand

2w1

multiple, see also related sequences under Entrez Gene link

XM_620268

See reference assemblies under the Entrez gene link

XP_620268

between Cox19 and 3110082I17Rik

Mm.332782 (5 ESTs)

545817

Chr 5qG2 139606289- 139610941 (+) strand

2ab1

multiple, see also related sequences under Entrez Gene link

NM_183158 partial

See reference assemblies under the Entrez gene link

NP_898981 partial

between Psar1 and Abcc5

Mm.276400 (2 ESTs)

224044

Chr 16qA3 20223349- 20230293 (-) strand

2ac1-ps

AC121932.2 from 85109 to 104018 (-) strand, missing exon 2

hold

NT_039649.6 from 26907054 to 26925963 (+) strand

hold

between Rhag and 9130008F23Rik

hold

hold

Chr 17qB2 40312801- 40331710 (+) strand

3a11

3A gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_007818

See reference assemblies under the Entrez gene link

NP_031844

between 3a44 and 3a25

Mm.332844 (197 ESTs)

13112

Chr 5qG2 146159304- 146184010 (-) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a11-de12bX

hold

hold

hold

hold

~20 kb downstream of 3a11

hold

hold

Chr 5qG2 146139266- 146139434 (+) strand, joined with Cyp3a44-de9b10b11b12b, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a13

X63023

NM_007819

See reference assemblies under the Entrez gene link

NP_031845

between Pilrb2 and Gje1, ~7.4 Mb centromeric to the 3a cluster

Mm.289886 (47 ESTs)

13113

Chr 5qG2 138124060- 138151300 (-) strand, ortholog of human CYP3A43 and paralog of rat 3a9 and 3a62

3a16

D26137

NM_007820

See reference assemblies under the Entrez gene link

NP_031846

between 3a57 and 3a58-ps

Mm.378905 (17 ESTs)

13114

Chr 5qG2 145689971- 145723167 (-) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a16-de12b

hold

hold

hold

hold

~10 kb upstream of 3a16

hold

hold

Chr 5qG2 145733259- 145733363 (-) strand

3a25

multiple, see also related sequences under Entrez Gene link

NM_019792

See reference assemblies under the Entrez gene link

NP_062766

between 3a11 and 3a59, 93% to 3a59, 90% to 3a57 (recent duplications)

Mm.384461 (19 ESTs)

56388

Chr 5qG2 146281844- 146313774 (-) strand, possible paralog with 3a57 and 3a59 of rat 3a18

3a25-de11c

hold

hold

hold

hold

~18 kb upstream of 3a25

hold

hold

Chr 5qG2 146331957- 146332124 (-) strand, fragment q in map

3a25-de8b9b12b

hold

hold

hold

hold

~9 kb downstream of 3a25

hold

hold

Chr 5qG2 146260283- 146272804 (+) strand

3a41a

AB033414

NM_017396

See reference assemblies under the Entrez gene link

NP_059092

between 3a16 and 3a44 there are two identical Cyp3a41 sequences 3a41a and 3a41b

Mm.379071 (7 ESTs)

53973

Chr 5qG2 145812193- 145838257 (-) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a41a-de12b

hold

hold

hold

hold

~11 kb upstream of 3a41a

hold

hold

Chr 5qG2 145849323- 145849487 (-) strand, identical to another seq at 146039664- 146039828

3a41b

AB033414

NM_017396

See reference assemblies under the Entrez gene link

NP_059092

between 3a16 and 3a44 there are two identical Cyp3a41 sequences 3a41a and 3a41b

Mm.379071 (7 ESTs)

53973

Chr 5qG2 145998284- 146024370 (-) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a41b-de12b

hold

hold

hold

hold

~11 kb upstream of 3a41b

hold

hold

Chr 5qG2 146039664- 146039828 (-) strand, identical to another seq at 145849323- 145849487

3a41-de1b2bX

hold

hold

hold

hold

100% to 3a16 exons 1 and 2, not in the current assembly upstream of 3a41, possible error in old assembly

hold

hold

Chr 5qG2 145720994- 145723167 (-) strand, appears to be 100% identical to 3a16

3a41-de12cX

hold

hold

hold

hold

upstream of 3a16 = 3a16-de12b, fragments y and x in the map seem to be a partial duplication of the 3a16 gene

hold

hold

Chr 5qG2 145733259- 145733369 (-) strand, upstream of 3a16 = 3a16-de12b

3a44

AB039380

NM_177380

See reference assemblies under the Entrez gene link

NP_796354

between 3a41 and 3a11

Mm.425301 (3 ESTs)

337924

Chr 5qG2 146078582- 146110023 (-) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a44- de9b10b11b12b

hold

hold

hold

hold

between 3a44 and 3a11, probable duplicate of 3a58-ps

hold

hold

Chr 5qG2 146122994- 146139434 (+) strand

3a44-de12c

hold

hold

hold

hold

between 3a41a and 3a41b

hold

hold

Chr 5qG2 145881566- 145881730 (-) strand, only one amino acid different from 3a63-ps, probably same seq. No other better hit in UCSC browser

3a57

XM_886540, missing exon 7 and part of exon 8

XM_886540

See reference assemblies under the Entrez gene link

XP_891633

between EG666311 and 3a16, on the centromeric edge of the 3a gene cluster

Mm. 359379 (13 ESTs)

EG622127, missing exon 7 and part of exon 8

Chr 5qG2 145598874- 145644036 (+) strand, probable paralog (with 3a25 and 3a59) of rat 3a18

3a58-ps

AC166650.7 from 167114 to 203403 (-) strand

hold

NT_039324.6 from 1621041 to 1661058 (+) strand

hold

between 3a16 and 3a41a

hold

hold

Chr 5qG2 145746139- 145786156 (+) strand, [3a16, 3a58-ps, 3a41] is a probable duplication of [3a44, 3a44-de9b10b11b12b, 3a11], paralogs to rat 3a23 and 3a2

3a59

XM_984830, not assembled correctly

XM_984830

AC104856.19 from 133235 to 166766 (+) strand, complete

AC113316.14 from 217720 to 243214 (-) strand, missing exons 1,2

See also reference assemblies under the Entrez gene link

XP_989924

between 3a25 and 3a60-ps and Rnf6 on the telomeric edge of the 3a gene cluster

no entry, no ESTs

LOC671077, not assembled correctly

Chr 5qG2 146383569- 146417100 (+) strand, 94% to Cyp3a25

3a59-de11b

hold

hold

hold

hold

~14 kb upstream of 3a59

hold

hold

Chr 5qG2 146369334- 146369527 (-) strand, fragment p in map

3a60-ps

AC113316.14 from 129449 to 140036 (-) strand

hold

NT_039324.6 from 2369686 to 2380273 (+) strand

hold

~77 kb downstream of 3a59, only 8 kb upstream of Rnf6

hold

hold

Chr 5qG2 146494784- 146505808 (+) strand

3a61-ps

AC132437.3 from 98406 to 106207 (+) strand

hold

NT_039315.6 from 1111716 to 1119517 (-) strand

hold

~18 kb upstream of Got2, ~462 kb upstream of Cyp3a13

hold

hold

Chr 5qG2 138613581- 138621382 (-) strand

3a61-ps-de11b

hold

hold

hold

hold

~22 kb upstream of 3a61-ps

hold

hold

Chr 5qG2 138642429- 138642608 (-) strand, fragment n in map

3a63-ps

hold

hold

See reference assemblies under the Entrez gene link

hold

between 3a41a and 3a41b

hold

LOC667065

Chr 5qG2 145878081- 145901346 (-) strand

3a-se3[1]X

hold

hold

hold

hold

between 3a16 and 3a41a

hold

hold

Chr 5qG2 frameshifted version of 3a58-ps exon 1

3a-se4[5:6]X

hold

hold

hold

hold

between 3a41a and 3a41b

hold

hold

Chr 5qG2 145889977- 145891471 (-) strand, whole genomic sequence has best match to 3a63-ps pseudogene. The fragment was removed from Genbank. This was probably a poor quality version of 3a63-ps. 95% to 3a63-ps

3a-se5[12]X

hold

hold

hold

hold

includes 3a41a-de12b

hold

hold

Chr 5qG2 145848299- 145850295 (+) strand, 2 kb genomic sequence near exon 12 has best match to 3a41a-de12b,3 diffs. The fragment was removed from Genbank. This was probably a poor quality version of 3a41a-de12b or 3a41b-de12b

3a-se6[12]

hold

hold

hold

hold

between 3a44 and 3a11, probable duplicate of 3a58-ps

hold

hold

Chr 5qG2 same as 3a44-de9b10b11b12b

3a-se7[8:9:10]X

hold

hold

hold

hold

3a-se12[8:9:10]

hold

hold

Chr 5qG2 145858643- 145863812 (-) strand, 5160 bp of the genomic sequence was 98.9% to 3a-se12[8:9:10] pseudogene region. The fragment was removed from Genbank. This was probably a poor quality version of 3a-se12[8:9:10]

3a-se8[3]X

hold

hold

hold

hold

3a63-ps

hold

hold

Chr 5qG2 145896182- 145897422 (-) strand, whole genomic sequence has best match to 3a63-ps pseudogene. The fragment was removed from Genbank. This was probably a poor quality version of 3a63-ps

3a-se9[8]X

hold

hold

hold

hold

3a63-ps

hold

hold

Chr 5qG2 145887345- 145888555 (+) strand, whole genomic sequence has best match to 3a63-ps pseudogene. The fragment was removed from Genbank. This was probably a poor quality version of 3a63-ps

3a-se10[12]

hold

hold

hold

hold

between 3a63-ps and 3a41b

hold

hold

Chr 5qG2 145966981- 145967132 (+) strand

3a-se11[2]X

hold

hold

hold

hold

between 3a41a and 3a41b

hold

hold

Chr 5qG2 145897672- 145900397 (-) strand, whole genomic sequence has best match to 3a63-ps pseudogene. The fragment was removed from Genbank. This was probably a poor quality version of 3a63-ps

3a-se12[8:9:10]

hold

hold

hold

hold

~9 kb upstream of 3a63-ps, ~20 kb upstream of 3a41a

hold

hold

Chr 5qG2 145858762 - 145869812 (+) strand

3a-se13[9]

hold

hold

hold

hold

between 3a63-ps and 3a41b

hold

hold

Chr 5qG2 145914343- 145914411 (+) strand, note there is a 50 kb sequence gap between this sequence and 3a-se10[12]. Exons 10 and 11 might be in this gap, so this may be apart of a larger pseudogene like 3a58-ps

3a-se14[8:9:10]

hold

hold

hold

hold

between 3a41b and 3a44

hold

hold

Chr 5qG2 146049138- 146064940 (+) strand, 91% to 3a-se12[8:9:10]

4a10

4abx gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_010011

See reference assemblies under the Entrez gene link

NP_034141

between 4a14 and 4a31

Mm.10742 (102 ESTs)

13117

Chr 4qD1 115016254- 115030628 (+) strand

4a12a

multiple

more, see also related sequences under Entrez Gene link

NM_177406

See reference assemblies under the Entrez gene link

NP_803125

between 4a29 and 4a30-ps

Mm.276106 (127 ESTs) This entry has both 4a12a and 4a12b sequences. NM_173206, BC060945 and AK098123 are Cyp4a12b sequences

277753 Cyp4a12a

Chr 4qD1 114797060- 114829931 (+) strand

4a12a-de5b

hold

hold

hold

hold

~14 kb upstream of 4a12a

hold

hold

Chr 4qD1 114785010- 114785162 (+) strand, fragment x in map

4a12b

multiple see also related sequences under Entrez Gene link

NM_172306

See reference assemblies under the Entrez gene link

NP_758510

between 4a30a-ps and 4a30b

Mm.276106 (127 ESTs) This entry has both 4a12a and 4a12b sequences. NM_173206, BC060945 and AK098123 are Cyp4a12b sequences

13118 Cyp4a12b, Note: Q91WL5 in the related sequences is Cyp4a12a

Chr 4qD1 114909615- 114936154 (+) strand

4a12b-de2b5b

hold

hold

hold

hold

~12 kb upstream of 4a12b

hold

hold

Chr 4qD1 114897231- 114897383 (+) strand, fragment w on map. Note UCSC browser does not find exon 2 piece because it is too short

4a14

multiple, see also related sequences under Entrez Gene link

NM_007822

See reference assemblies under the Entrez gene link

NP_031848

between 4a30b and 4a10

Mm.250901 (82 ESTs)

13119

Chr 4qD1 114985078- 114994045 (-) strand

4a28-ps

AJ297131 Cyp_b

XM_144007 removed

XM_144008 removed

XM_144009 removed

See reference assemblies under the Entrez gene link

XP_144007 removed

XP_144008 removed

XP_144009 removed

~5 kb upstream of Cyp4x1

Mm.425202 (0 ESTs)

547220 mistakenly called Cyp4a21-ps, CYP4A21 is a pig gene

Chr 4qD1 114636503- 114654438 (-) strand

4a29

multiple, see also related sequences under Entrez Gene link

XM_144013

See reference assemblies under the Entrez gene link

XP_144013

between 4a28-ps and 4a12a

no entry

230639 mistakenly called 4a11, CYP4A11 is a human gene

Chr 4qD1 114740016- 114752483 (+) strand

4a29-de12b

XM_144010 removed

XM_144010 removed

No entry

XP_144010 removed

~66 kb upstream of 4a29

no entry

no entry

Chr 4qD1 114673730- 114673861 (+) strand, fragment z in map

4a29-de5b6b7b9b

XM_144011 removed

XM_144011 removed

No entry

XP_144011 removed

~22 kb upstream of 4a29

no entry

no entry

Chr 4qD1 114716548- 114718054 (+) strand, fragment y in map

4a30a-ps

XM_144015 removed

XM_144015 removed

NT_039264.5 from 15467592 to 15486916 (+) strand

XP_144015 removed

between 4a12a and 4a12b

no entry

LOC546842

Chr 4qD1 114841720- 114861044 (+) strand

4a30b

multiple

XM_487818

See reference assemblies under the Entrez gene link

XP_487818

between 4a12b and 4a14

Mm.425203 (0 ESTs)

LOC435802

Chr 4dD1 114950536- 114968991 (+) strand

4a31

BC013476

NM_201640 not assembled correctly

See reference assemblies under the Entrez gene link

NP_964002

between 4a10 and 4a32

Mm.10742 (102 ESTs) this entry includes Cyp4a10

545670, BC013476, not assembled correctly

Chr 4qD1 115061649- 115076033 (+) strand, 94% to 4a10 and 4a32

4a32

XM_973602

XM_973602

XM_983113, both are not assembled correctly

AL626805.14 from 63696 to 84320 (+) strand

See reference assemblies under the Entrez gene link

XP_978696

XP_988207

~3 kb upstream of 4b1, between 4a31 and 4b1

no entry

LOC674313

LOC670755

Chr 4qD1 115098907- 115119531 (+) strand

4b1

4abx gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_007823

See reference assemblies under the Entrez gene link

NP_031849

~3 kb downstream of 4a32, on the telomeric edge of the 4abx gene cluster

Mm.1840 (517 ESTs)

13120

Chr 4qD1 115122980- 115145619 (-) strand

4b1-de2b4b

hold

hold

hold

hold

between 4a11 and 4a31

hold

hold

Chr 4qD1 115041317- 115042981 (-) strand

4b1-de10c11c12c

hold

hold

hold

hold

between 4a31 and 4a32

hold

hold

Chr 4qD1 115080221- 115081077 (-) strand

4f13

4F gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_130882

See reference assemblies under the Entrez gene link

NP_570952

between 4f14 and 4f41-ps, near the telomeric edge of the 4f gene cluster

Mm.254838 (96 ESTs)

170716

Chr 17qB1 32663198- 32685420 (-) strand

4f14

multiple, see also related sequences under Entrez Gene link

NM_022434

See reference assemblies under the Entrez gene link

NP_071879

~8 kb downstream of 4f13

Mm.426027 (77 ESTs)

64385

Chr 17qB1 32643922- 32655303 (-) strand

4f15

multiple, see also related sequences under Entrez Gene link

NM_134127

See reference assemblies under the Entrez gene link

NP_598888

~10 kb downstream of 4f40

Mm.26539 (45 ESTs)

106648

Chr 17qB1 32425367- 32442267 (+) strand

4f16

multiple, see also related sequences under Entrez Gene link

NM_024442

See reference assemblies under the Entrez gene link

NP_077762

~8 kb downstream of 4f17

Mm.30504 (142 ESTs), includes 4f37 mRNA AK132492

70101

Chr 17qB1 32272233- 32286411 (+) strand

4f17

XM_139863

XM_139863

See reference assemblies under the Entrez gene link

XP_139863

between 4f39 and 4f16

Mm.311422 (17 ESTs)

208285

Chr 17qB1 32242549- 32264370 (+) strand

4f18

multiple, see also related sequences under Entrez Gene link

NM_024444

See reference assemblies under the Entrez gene link

NP_077764

between AK032580 and olfr372

Mm.160020 (24 ESTs)

72054

Chr 8qB3.3 74917552- 74938230 (-) strand, not in the Cyp4f gene cluster

4f37

AK132492, XR_003830

NM_001001020

See reference assemblies under the Entrez gene link

XP_001001020

~8 kb upstream of 4f38-ps

no entry, AK132492 and EST BY707030 are included in the Cyp4f16 entry

LOC677156

Chr 17qB1 32359522- 32374187 (+) strand

4f37-ie6b

hold

hold

hold

hold

internal exon 6 duplication

hold

hold

Chr 17qB1 32367558- 32367671 (+) strand

4f37-de1b

hold

hold

hold

hold

~31 kb downstream of Cyp4f16

hold

hold

Chr 17qB1 32316950- 32317042 (+) strand, fragment z in map

4f37-de7b8b

hold

hold

hold

hold

~16 kb upstream of 4f37

hold

hold

Chr 17qB1 32340930- 32343072 (+) strand, fragment y in map

4f38-ps

CT033759.32 from 103692 to 114224 (+) strand

no entry

NT_039649.6 from 18976266 to 18986802 (+) strand

no entry

between 4f37 and 4f40

no entry

no entry

Chr 17qB1 32382013- 32392549 (+) strand

4f39

NM_177307

NM_177307

See reference assemblies under the Entrez gene link

NP_796281

4732474A20Rik, between Pglyrp2 and 4f17, on the centromeric edge of the 4f gene cluster

Mm.130900 (20 ESTs)

320997, 4732474A20Rik

Chr 17qB1 32204192- 32228131 (+) strand

4f40

XM_992966

XM_992966

See reference assemblies under the Entrez gene link

XP_998060

between 4f38-ps and 4f15

Mm.328950 (1 EST)

EG631304

Chr 17qB1 32398839- 32415784 (+) strand

4f41-ps

XM_128564

XM_128564

See reference assemblies under the Entrez gene link

XP_128564

~5 kb upstream of 4f13, at the telomeric edge of the 4f gene cluster

hold

77875, 6030422M01Rik

Chr 17qB1 32690159- 32696292 (-) strand

4v3

multiple, see also related sequences under Entrez Gene link

NM_133969

See reference assemblies under the Entrez gene link

NP_598730

between Klkb1 and BC035537

Mm.245297 (194 ESTs)

102294

Chr 8qB1.1 46805756- 46831795 (-) strand

4x1

4abx gene cluster map

multiple, see also related sequences under Entrez Gene link

NM_001003947

See reference assemblies under the Entrez gene link

NP_001003947

between Pdzk1ip1 and 4a28-ps, on the centromeric edge of the 4abx gene cluster

Mm.215544 (10 ESTs)

81906

Chr 4qD1 114606626- 114631909 (-) strand

5a1

multiple, see also related sequences under Entrez Gene link

NM_011539

See reference assemblies under the Entrez gene link

NP_035669

Tbxas1, between Hipk2 and Parp12

Mm.4054 (112 ESTs)

21391

Chr 6qB1 38848760- 39013974 (+) strand, thromboxane A synthase

7a1

L23754

NM_007824

See reference assemblies under the Entrez gene link

NP_031850

between 3110003A22Rik and Sdcbp

Mm.57029 (34 ESTs)

13122

Chr 4qA1 6195362- 6202718 (-) strand

7b1

multiple, see also related sequences under Entrez Gene link

NM_007825

See reference assemblies under the Entrez gene link

NP_031851

between Bhlhb5 and Mrpl42

Mm.316000 (72 ESTs)

13123

Chr 3qA1 18264611- 18435354 (-) strand

8a1

multiple, see also related sequences under Entrez Gene link

NM_008968

See reference assemblies under the Entrez gene link

NP_032994

between Kcnb1 and B4galt5

Mm.2339 (122 ESTs)

19223

Chr 2qH3 166894532- 166931625 (-) strand, also called prostaglandin I2 synthase

8b1

multiple, see also related sequences under Entrez Gene link

NM_010012

See reference assemblies under the Entrez gene link

NP_034142

between Ccbp2 and C730027P07Rik

Mm.20889 (42 ESTs)

13124

Chr 9qF4 121763463- 121764962 (-) strand, sterol 12 alpha hydroxylase

11a1

multiple, see also related sequences under Entrez Gene link

NM_019779

See reference assemblies under the Entrez gene link

NP_062753

between Sema7a and Ccdc33

Mm.302865 (153 ESTs)

13070

Chr 9qB 57813176- 57824986 (+) strand

11b1

NM_001033229

NM_001033229

See reference assemblies under the Entrez gene link

NP_001028401

between Hemt1 and Cyp11b2

Mm.322606 (17 ESTs)

110115

Chr 15qD3 74663011- 74668861 (-) strand

11b2

multiple, see also related sequences under Entrez Gene link

NM_009991.2

See reference assemblies under the Entrez gene link

NP_034121

between Cyp11b1 and 2010109I03Rik

Mm.377079 (0 ESTs)

13072

Chr 15qD3 74678297- 74683480 (-) strand

17a1

multiple, see also related sequences under Entrez Gene link

NM_007809

See reference assemblies under the Entrez gene link

NP_031835

between Bcap29 and 2010012O05Rik

Mm.1262 (83 ESTs)

13074

Chr 19qC3 46720639- 46726154 (-) strand

19a1

multiple, see also related sequences under Entrez Gene link

NM_007810

See reference assemblies under the Entrez gene link

NP_031836

between Tnfaip813 and Gldn

Mm.5199 (10 ESTs)

13075

aromatase Chr 9qA5.3 53964897- 53991538 (-) strand

20a1

AK020848

NM_030013

See reference assemblies under the Entrez gene link

NP_084289

between BC060141 and Abi2

Mm.197640 (57 ESTs)

77951

Chr 1qC2 60287932- 60331832 (+) strand

21a1

multiple, see also related sequences under Entrez Gene link

NM_009995

See reference assemblies under the Entrez gene link

NP_034125

between Tnxb and C4a

Mm.18845 (84 ESTs)

13079

Chr 17qB1 34409839- 34412455 (-) strand, note: there is a segmental duplication here that includes Cyp21a1 and its neighbors, the RCCX module

21a2-ps

multiple, see also related sequences under Entrez Gene link

no entry

See reference assemblies under the Entrez gene link

no entry

between Tnxb-ps (a pseudogene duplicate of Tnxb) and C4b

Mm.426014 (0 ESTs, 1 mRNA)

13080 incorrect assignment, this is the last exon of the the intact Cyp21a1 gene

632302 correct pseudogene

Chr 17qB1 34327872- 34330308 (-) strand, pseudogene, note: there is a segmental duplication here that includes Cyp21a2-ps and its neighbors, the RCCX module

24a1

multiple

NM_009996

See reference assemblies under the Entrez gene link

NP_034126

between Sumo1 and Pfdn1

Mm.6575 (137 ESTs)

13081

Chr 2qH3 170176885- 170187979 (-) strand

26a1

see related sequences under Entrez Gene link

NM_007811

See reference assemblies under the Entrez gene link

NP_031837

downstream of Cyp26c1, no close neighbors downstream

Mm.42230 (28 ESTs)

13082

Chr 19qC2 37763054- 37766492 (+) strand

26b1

multiple, see also related sequences under Entrez Gene link

NM_175475

See reference assemblies under the Entrez gene link

NP_780684

between Dysf and Exoc6 paralog

Mm.255246 (86 ESTs)

232174

Chr 6qC3 84539928- 84553663 (-) strand, 26b1 and 26a1/26c1 may be remnants of a whole genome duplication.

26c1

XM_621503

XM_621503

See reference assemblies under the Entrez gene link

XP_621503

between Exoc6 and Cyp26a1

no entry

546726

Chr 19qC2 37750824- 37758448 (+) strand, Mm19_WIFeb01_321, 26b1 and 26a1/26c1 may be remnants of a whole genome duplication.

27a1

multiple, see also related sequences under Entrez Gene link

NM_024264

See reference assemblies under the Entrez gene link

NP_077226

between Ttll4 and Prkag3

Mm.85083 (134 ESTs)

104086

Chr 1qC3 74646838- 74670863 (+) strand

27b1

multiple, see also related sequences under Entrez Gene link

NM_010009

See reference assemblies under the Entrez gene link

NP_034139

between Mttl1 and March9

Mm.6216 (13 ESTs)

13115

Chr 10qD3 126451209- 126455090 (+) strand

27c1

deleted in mouse

no entry

no entry

no entry

no entry

no entry

no entry

no entry

Between BIN1 and ERCC3 on Chr 2 in humans, not found in the syntenic region of mouse Chr 18

39a1

multiple, see also related sequences under Entrez Gene link

NM_018887

See reference assemblies under the Entrez gene link

NP_061375

between Slc25a27 (uncoupling protein 4) and Dscr1l1

Mm.376968 (67 ESTs)

56050

Chr 17qB3 43130664- 43213027 (+) strand, note: there are only 409 bp between Cyp39a1 and Ucp4. They must share a common promoter.

46a1

multiple, see also related sequences under Entrez Gene link

NM_010010

See reference assemblies under the Entrez gene link

NP_034140

between 1600002O04Rik and Eml1

Mm.41911 (82 ESTs)

13116

Chr 12qF1 108782253- 108809488 (+) strand

51a1

multiple, see also related sequences under Entrez Gene link

NM_020010

See reference assemblies under the Entrez gene link

NP_064394

between Akap9 and Mterf

Mm.140158 (503 ESTs)

13121

Chr 5qA1 4089134- 4110262 (-) strand