Rat Cytochrome P450s

Note on Jan. 24, 2007 I started this page. Completed April 27, 2007

The rat genome has 88 P450 genes and 69 P450 pseudogenes.

This table has over 850 links to sequence and map data

I include seven gene cluster maps that show human, mouse and rat compared (red links in the first column).

These map links are also included in the human master table. These maps are further described in:

Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes

Pharmacogenetics 14, 1-18 2004

The maps and the nucleotide numbering in the protein sequence links were based

on an earlier version of the rat genome assembly, so the numbers are a little

different from the new UCSC browser nucleotide numbering.

Current UCSC links are based on the Nov. 2004 assembly.

My first links to UCSC were unstable. I have now replaced those links with a

stable format: http://genome.ucsc.edu/cgi-bin/hgTracks?org=rat&db=rn4&position=chr8%3A61350064-61538088

These links should be permanent.

The Entrez Gene links have extensive data and links for intact sequences and some pseudogenes.

For a complete set of rat P450 sequences including pseudogenes go to the FASTA file

All rat P450 genes and all P450 pseudogenes will be included in this table.

CYP names in column 1 are linked to their protein sequences, including the pseudogenes.

X at the end of a CYP name means that name has been discontinued and replaced by a new name

Pseudogenes are named using suffixes to specify the four types of pseudogenes defined as:

P is a full length or near full length pseudogene, it may be near or far from other P450s.

-ps is equivalent to P, but it is required nomenclature for mouse and rat full length pseudogenes.

-de stands for detritus exons (found near other full length genes).

-se stands for solo exons, one or a few exons found distant from a P450 gene.

-ie stands for internal exons, duplicate exons found inside some P450 genes.

Cyp

Genbank

RefSeq mRNA

Genomic Assemblies

RefSeq Protein

UCSC genome browser

Unigene

EntrezGene

comments

1a1

see related sequences under the Entrez Gene link

NM_012540

see reference assembly under the Entrez Gene link

NP_036672

Cyp1a1 and 1a2

Rn.10352 (4 ESTs)

Cyp1a1

8q24, Chr8: 61464759- 61467268 (+) strand

1a2

see related sequences under the Entrez Gene link

NM_012541

see reference assembly under the Entrez Gene link

NP_036673

Cyp1a1 and 1a2

Rn.5563 (9 ESTs)

Cyp1a2

8q24, Chr8: 61439330- 61445517 (-) strand

1b1

see related sequences under the Entrez Gene link

NM_012940

see reference assembly under the Entrez Gene link

NP_037072

Cyp1b1

Rn.10125 (15 ESTs)

Cyp1b1

6q11, Chr6: 2548542- 2553015 (-) strand

2a1

2ABFGST gene cluster map

see related sequences under the Entrez Gene link

NM_012692

see reference assembly under the Entrez Gene link

NP_036824

Cyp2abfgst cluster

Rn.32107 (17 ESTs)

Cyp2a1

1q21, Chr1: 82006847- 82020093 (+) strand, Cyp2a22 mouse ortholog

2a1-de2b

M33312.1

no entry

no entry

no entry

Cyp2a1-de2b

no entry

no entry

1q21, Chr1: 82006542- 82006607 (-) strand, upstream of 2a1 on opp strand, frag e in 2a cluster map

2a2

see related sequences under the Entrez Gene link

NM_012693

see reference assembly under the Entrez Gene link

NP_036825

Cyp2a1 and 2a2

Rn.9867 (16 ESTs)

Cyp2a2

1q21, Chr1: 82039238- 82063522 (+) strand, Cyp2a12 mouse ortholog

2a2-de2b

M33312.1

no entry

no entry

no entry

Cyp2a2-de2b

no entry

no entry

1q21, Chr1: 82037313- 82037417 (-) strand, upstream of 2a2 on opp strand, frag f in 2a cluster map

2a3

see related sequences under the Entrez Gene link

NM_012542

see reference assembly under the Entrez Gene link

NP_036674

Cyp2a1, 2a2, 2a3

Rn.2063 (3 ESTs)

Cyp2a3

1q21, Chr1: 81944896- 81952812 (+) strand, Cyp2a5 mouse ortholog

2a3-de1b

multiple

no entry

no entry

no entry

Cyp2a3-de1b

no entry

no entry

1q21, Chr1: 81974029- 81974133 (+) strand, downstream of 2a3 on same strand, frag d in 2a cluster map

2b1

2ABFGST gene cluster map

multiple

XM_001070869

AAHX01004337

multiple

Cyp2b1 center seq. Gene to the right is Cyp2b2

no entry, improperly merged with Cyp2b2

Cyp2b1

1q21, chr1:81266845- 81290085, ortholog of mouse Cyp2b10

2b2

J00720-J00728

no entry

AAHX01004340

multiple

Cyp2b2 right side seq. Gene to the left is Cyp2b1

Rn.91353 (33 ESTs), improperly merged with Cyp2b1

Cyp2b2

1q21, chr1:81345425- 81359030, ortholog of mouse Cyp2b13

2b3

see related sequences under the Entrez Gene link

NM_173294

see reference assembly under the Entrez Gene link

NP_775416

Cyp2b3 exons 1-8, exon 9 is misplaced

Rn.4845 (57 ESTs)

Cyp2b3

1q21, chr1: 81408456- 81459262, exon 9 81185069- 81185251, genome assembly error, exon 9 is in the wrong place, does not match ESTs that support Cyp2b3, ortholog of mouse Cyp2b9

2b3-se1[9]

no entry

no entry

no entry

no entry

Cyp2b3- se1[9] exon 9 pseudogene

no entry

no entry

1q21, exon 9 pseudogene, 81185069- 81185251, genome assembly error?, 100% match to Cyp2b3 mRNA upstream of Cyp2b1, fragment a in Cyp2abfgst cluster map

2b3-se2[1]

no entry

no entry

no entry

no entry

Cyp2b3- se2[1] exon 1 pseudogene

no entry

no entry

1q21, exon 1 pseudogene, 81230276- 81230446, 100% match to Cyp2b3 mRNA upstream of Cyp2b1 on opposite strand, fragment b in Cyp2abfgst cluster map

2b12

X63545

NM_017156

NC_005100.2 from 81780088 to 81791770

NP_058852

center gene, Cyp2b32-ps left side seq., Cyp2b31 right side sequence. Incorrectly labled Cyp2b15 in UCSC browser

Rn.144570 (0 ESTs), incorrectly named Cyp2b15

Cyp2b12 (X63545 seq), warning misnamed Cyp2b15 and includes Cyp2b1 accessions, needs major revision

1q21, chr1:81780127- 81791000, Cyp22b12, 2b15 and 2b31 are possible paralogs of mouse Cyp2b19, see map

2b12-de9b

no entry

no entry

AAHX01004353 from 5896 to 6075 (+) strand

no entry

small left side seq., Cyp2b12 on the right side is mistakenly labeled Cyp2b15.

no entry

no entry

1q21, chr1:81750901- 81751080, upstream of Cyp2b12 on opposite strand, frag. c in Cyp2abfgst cluster map

2b14-ps

U33540

no entry

AAHX01004350 from 49244 to 70481

no entry

Cyp2b14-ps left side seq., Cyp2b21 right side seq.

no entry

no entry

1q21, Chr1:81628189- 81650662 (+) strand

2b15

D17343 to D17349

no entry

AABR03002513 from 29026 to 29202 (+) strand, exon 1

AAHX01004359 from 4054 to 12264 (-) strand, exons 4-9

no entry

right side seq. (exons 1,5-9), left side seq. = Cyp2b31

no entry, the Cyp2b15 entry is actually Cyp2b12

no entry, the Cyp2b15 entry is a mixture of Cyp2b12 and Cyp2b1

1q21, chr1:81866957- 81879265 (+) strand, exons 2-4 in a seq gap

2b16-ps

U33541 to U33545

U33546

no entry

AAHX01004347 from 5656 to 31499 (-) strand

no entry

Cyp2b16-ps lies between 2b3 and 2b14p

no entry

no entry

1q21, Chr1: 81555838- 81581670 (+) strand

2b21

see related sequences under the Entrez Gene link

NM_198733

see reference assembly under the Entrez Gene link

NP_942028

Cyp2b21 lies between 2b14p and 2b32-ps

Rn.38261 (2 ESTs) incorrectly named Cyp2b13

CYP2b21 incorrectly named Cyp2b13 (a mouse gene)

1q21, chr1: 81658529- 81687115, (-) strand, ortholog of mouse Cyp2b23

2b31

XM_577774

XM_577774

AABR03002513 from 1999 to 14226 (+) strand

XP_577774

Cyp2b31 lies between 2b12 and 2b15

no entry

no entry

1q21, chr1: 81839930- 81852357, (+) strand, Cyp2b31, 2b12 and 2b15 are possible paralogs of mouse Cyp2b19, see map

2b32-ps

XM_001077535 nucl. 31-636 matches exons 2,4,5 and 6, the rest is Cyp2b12

no entry

AAHX01004351 from 1039 to 6308 (-) strand

no entry

Cyp2b32-ps lies between 2b21 and 2b12

no entry

no entry

1q21, chr1: 81728417- 81733686, (+) strand

2c6v1

2C gene cluster map

M13711 and other entries in Entrez Gene

XM_001066767.1

NW_047565.2 from 12042110 to 12081061 (+) strand. See also assemblies in Entrez gene

XP_001066767.1

upstream of Cyp2c7

Rn.91122 (397 ESTs), Cyp2c6

Rn.160031 (4 ESTs), Cyp2c6

Cyp2c6

1q53, NW_047565.2 from 12042110 to 12081061 (+) strand, upstream of 2c7

2c6v1- de1b2b3b4b5b

no entry

no entry

NW_047565.2 from 12022325 to 12026993 (+) strand.

no entry

upstream of Cyp2c6v1

no entry

no entry

1q53, NW_047565.2 from 12022325 to 12026993 (+) strand, upstream of 2c6v1, fragment o, 96% identical to fragment c

2c6-se1 [1:2:3:2:3]

no entry

no entry

NW_047565.2 from 12131467 to 12139285 (+) strand

no entry

downstream of Cyp2c6

no entry

no entry

1q53, NW_047565.2 from 12131467 to 12139285 (+) strand, downstream of 2c6, fragments m+n in map.

2c7

M18335 also see other entries in Entrez Gene

NM_017158.1

NW_047565.2 from 11885812 to 11915970 (+) strand. N-term in a seq gap. See also assemblies in Entrez gene

NP_058854.1

upstream of Cyp2c6

Rn.1247 (25 ESTs), Cyp2c7

Cyp2c7

1q53, NW_047565.2 from 11885812 to 11915970 (+) strand, upstream of 2c6

2c7-de7b

no entry

no entry

NW_047565.2 from 11879492 to 11879677 (+) strand

no entry

downstream of Cyp2c7

no entry

no entry

1q53, NW_047565.2 from 11879492 to 11879677 (+) strand, fragment r on map downstream of Cyp2c7, 100% to frag a CYP2C81-de7b

2c7-se1 [2:3:6:7:9]

no entry

no entry

NW_047565.2 from 12150684 to 12210973 (+) strand

no entry

upstream of Cyp2c82-ps

no entry

no entry

1q53, NW_047565.2 from 12150684 to 12210973 (+) strand, between 2c6 and 2c82-ps, fragments j+k in map. Nearly identical to 2c7

2c7-se3[8]

no entry

no entry

NW_047565.2 from 11836177 to 11836314 (-) strand

no entry

downstream of Cyp2c7

no entry

no entry

1q53, NW_047565.2 from 11836177 to 11836314 (-) strand, fragment t on map downstream of Cyp2c7

2c7-se4[8:9]

no entry

no entry

NW_047565.2 from 11809387 to 11812694 (-) strand

no entry

downstream of Cyp2c7

no entry

no entry

1q53, NW_047565.2 from 11809387 to 11812694 (-) strand, fragment u on map downstream of Cyp2c7, 87% to Cyp2c81-de8c frag 2

2c11

multiple

NM_019184

AAHX01000338 from 94107 to 107640 (+) strand, aa 1-276

AAHX01000339 from 4340 to 20589 (-) strand, aa 274-500

NP_062057

Cyp2c11 at the centromeric edge of the 2c cluster, adjacent to hells

Rn.10870 (258 ESTs), called Cyp2c in Unigene

Cyp2c11

1q53, Chr1: 243281340- 243320612, male specific, Cyp2c52-ps mouse ortholog

2c12

see related sequences under the Entrez Gene link

NM_031572

NW_001084775 from 133145 to 189992 (-) strand

NP_113760

Cyp2c12, downstream of Cyp2c13, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

Rn.2586 (697 ESTs)

Cyp2c12, female specific, mistakenly called Cyp2c40, paralog of the mouse Cyp2c40, 2c67, 2c68 and 2c69 genes

1q53, NW_001084775 from 133145 to 189992 (-) strand

2c12-de8b

no entry

no entry

NW_001084775 from 127088 to 127213 (-) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 127088 to 127213 (-) strand, 6 kb downstream of 2c12, 1 amino acid diff. to Cyp2c81-de8c

2c13

see related sequences under the Entrez Gene link

NM_138514

NW_001084775 from 219120 to 300164 (-) strand

NP_612523

Cyp2c12, downstream of Cyp2c13, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

Rn.82715 (132 ESTs)

Cyp2c13, paralog of the mouse Cyp2c40, 2c67, 2c68 and 2c69 genes

1q53, NW_001084775 from 219120 to 300164 (-) strand

2c13-de1b2b

no entry

no entry

NW_001084775 from 339611 to 353773 (-) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 339611 to 353773 (-) strand, fragments 6,7 upstream of Cyp2c13

2c13-de4c5c

no entry

no entry

NW_001084775 from 202080 to 203586 (+) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 202080 to 203586 (+) strand, new fragment between Cyp2c12 and Cyp2c13

2c13-se1[6]

no entry

no entry

NW_047565.2 from 12251668 to 12251809 (+) strand

no entry

upstream of Cyp2c82-ps

no entry

no entry

1q53, NW_047565.2 from 12251668 to 12251809 (+) strand, upstream of Cyp2c82-ps, fragment h in map. Identical to a fragment near fragment v in map

2c13-se2[6:7]

no entry

no entry

NW_047565.2 from 11846494 to 11852957 (-) strand

no entry

downstream of Cyp2c7

no entry

no entry

1q53, NW_047565.2 from 11846494 to 11852957 (-) strand, fragment s on map downstream of Cyp2c7, identical to frag h

2c13-se3 [1:2:3:2:3:]

no entry

no entry

NW_047565.2 from 12299636 to 12301994 (-) strand

no entry

upstream of Cyp2c82-ps

no entry

no entry

1q53, NW_047565.2 from 12299636 to 12301994 (-) strand, upstream of Cyp2c82-ps, fragment f in map. Identical to fragment v in map

2c13-se4 [1:2:3]

no entry

no entry

NW_047565.2 from 11765188 to 11766652 (+) strand

no entry

between frags u and x

no entry

no entry

1q53, NW_047565.2 from 11765188 to 11766652 (+) strand, downstream of Cyp2c7, fragment v in map. Identical to fragment f

2c22

see related sequences under the Entrez Gene link

NM_138512

see reference assembly under the Entrez Gene link

NP_612521

Cyp2c22, on the telomeric edge of the 2c cluster, next to Pdlim1

Rn.88025 (223 ESTs)

Cyp2c22, mistakenly called Cyp2c70 for the mouse ortholog

1q53, chr1: 245298599- 245329426 Cyp2c70 mouse ortholog

2c22-se1[8]

no entry

no entry

NW_047565.2 from 12288092 to 12288164 (-) strand

no entry

upstream of Cyp2c82-ps

no entry

no entry

1q53, NW_047565.2 from 12288092 to 12288164 (-) strand, upstream of Cyp2c82-ps, fragment g in map. Identical to two fragments near fragment v in map

Cyp2c22- se2[1:2]

no entry

no entry

NW_001084775 from 376374 to 389507 (+) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 376374 to 389507 (-) strand, 48kb downstream of Cyp2c22, fragments 8,9 on map

2c22-se3[8]

no entry

no entry

NW_047565.2 from 11774859 to 11774931 (+) strand

no entry

between frags u and v

no entry

no entry

1q53, NW_047565.2 from 11774859 to 11774931 (+) strand, downstream of Cyp2c7, fragment 10 in map. Identical to fragment g

2c22-se4[8]

no entry

no entry

NW_047565.2 from 11776742 to 11776814 (+) strand

no entry

between frags u and v

no entry

no entry

1q53, NW_047565.2 from 11776742 to 11776814 (+) strand, downstream of Cyp2c7, fragment 11 in map. Identical to fragment g

2c23

see related sequences under the Entrez Gene link

NM_031839.2

NW_047566.2 from 2165733 to 2189928 (+) strand

NW_001084775 from 4291818 to 4316013 (-) strand

NP_114027

Cyp2c23, 4.1 Mb from the 2c cluster, flanked by Erlin1 and Cpn1

Rn.2184 (286 ESTs)

Cyp2c23

1q54, chr1: 249204073- 249228265 Cyp2c44 mouse ortholog

2c24

M86678

XM_574665.2

NW_001084774.1 from 50448200 to 50492967 (+) strand, first exon on EST CK481568.1

XP_574665.2

downstream of Cyp2c211, assembly in error here

Rn.198563 (1 EST)

RGD1563697 predicted, partial seq of Cyp2c24

1q53, chr1: 243422110- 243425514 Cyp2c55 mouse ortholog, orientation in conflict, probably in gene order 2C11(+), 2C24(+), 2C80(+), 2C79(+), with 2C79 and 2C80 in the wrong location on the map

2c77-ps

no entry

no entry

NW_047565.2 from 12444376 to 12482016 (+) strand

no entry

Cyp2c77-ps, downstream from 2c82-ps, the gene has three frameshifts

no entry

LOC686022, includes Cyp2c77- de1b2b3b4b5b

1q53, chr1: 244261291- 244298928, 13 aa diffs to Cyp2c6_v1, paralog to mouse 2c29, 2c38, 2c39

2c77- de1b2b3b4b5b

no entry

no entry

NW_047565.2 from 12424424 to 12429575 (+) strand

no entry

Cyp2c77- de1b2b3b4b5b, downstream from 2c82-ps

no entry

LOC686022, includes Cyp2c77-ps

1q53, chr1: 244241339- 244246490, 9 aa diffs to CYP2C6v1_v1- de1b2b3b4b5b, 2c77-ps and its pseudogene result from a block duplication of 2c6_v1 and its pseudogene

2c79

XM_219933.3 complete

XM_001080345 partial, XM_219933.3 complete

NW_001084774.1 from 50635105 to 50699203 (+) strand, partial seq exons 4-7

XP_219933.2 complete, XP_001080345 partial

downstream of Cyp2c211, assembly in error here

Rn.154478 (1 EST)

Cyp2c65 predicted, paralog of mouse Cyp2c65 and 2c66

1q53, chr1: NW_001084774 50635105 to 50699203 (+) probably in gene order 2C11(+), 2C24(+), 2C80(+), 2C79(+), with 2C79 and 2C80 in the wrong location on the map

2c79-de9b

no entry

no entry

NW_047565.2 from 12577788 to 12577898 (-) strand

no entry

downstream of Cyp2c79, assembly may be in error here

no entry

no entry

1q53, NW_047565.2 from 12577788 to 12577898 (-) strand, fragment b on map downstream of Cyp2c79

Cyp2c79-se1[9]

no entry

no entry

NW_047565.2 from 11971674 to 11971853 (+) strand.

no entry

between Cyp2c6v1 and 2c7

no entry

no entry

1q53, NW_047565.2 from 11971674 to 11971853 (+) strand, upstream of 2c6v1, fragment p, 100% identical to Cyp2c79 exon 9

2c80

XM_001080338 complete

XM_001080338 complete, XM_217906.4 partial

NW_001084774.1 from 50565229 to 50609865 (+) strand

XP_001080338 complete, XP_217906.4 partial

downstream of Cyp2c211, assembly in error here

Rn.154468 (1 EST)

Cyp2c55 predicted, ortholog of mouse Cyp2c55, 91% to Cyp2c24

1q53, chr1: NW_001084774 50565229 to 50609865 (+) probably in gene order 2C11(+), 2C24(+), 2C80(+), 2C79(+), with 2C79 and 2C80 in the wrong location on the map

2c81

Gnomon model: hmm62430, N-term incorrect

XM_001058491.1, not accurate

NW_047565.2 from 12758605 to 12805314 (+) strand

XP_001058491.1, not accurate

in a region of uncertainty

no entry

no entry

1q53, chr1: NW_047565.2 from 12758605 to 12805314 (+) strand, missing exon 1

2c81-de7b

no entry

no entry

NW_047565.2 from 12810967 to 12811155 (-) strand

no entry

in a region of uncertainty

no entry

no entry

1q53, NW_047565.2 from 12810967 to 12811155 (-) strand, fragment a on map downstream of Cyp2c81

2c81-de8b

no entry

no entry

NW_047565.2 from 12823758 to 12823898 (+) strand

no entry

in a region of uncertainty

no entry

no entry

1q53, NW_047565.2 from 12823758 to 12823898 (+) strand, fragment 1 on map downstream of Cyp2c81

2c81-de8c

no entry

no entry

NW_047565.2 from 12850765 to 12850905 (+) strand

no entry

in a region of uncertainty

no entry

no entry

1q53, NW_047565.2 from 12850765 to 12850905 (+) strand, fragment 2 on map downstream of Cyp2c81

2c81-de1d

no entry

no entry

NW_001084775 from 6139 to 6294 (+) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 6139 to 6294 (+) strand, downstream of 2c12, fragment 3 on map

2c81-de6e7e

no entry

no entry

NW_001084775 from 23979 to 24128 (+) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 23979 to 24128 (+) strand, downstream of 2c12, fragment 4 on map

2c81- de1f2f3f

no entry

no entry

NW_001084775 from 35664 to 49635 (-) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 35664 to 49635 (-) strand, downstream of 2c12, fragment 5 on map

2c81-de4g5g

no entry

no entry

NW_001084775 from 89971 to 91407 (-) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 89971 to 91407 (-) strand, new fragment upstream of fragment 5 on map

2c81-de3h

no entry

no entry

NW_001084775 from 3225 to 3359 (+) strand

no entry

downstream of Cyp2c12, this fragment is unmapped but Cyp2c12 and Cyp2c13 are mapped downstream of 2c22 on NW_001084775

no entry

no entry

1q53, NW_001084775 from 3225 to 3359 (+) strand, new fragment upstream of fragment 3 on map

2c82-ps

no entry

no entry

NW_047565.2 from 12305221 to 12373089 (+) strand

no entry

upstream of Cyp2c77-ps

no entry

no entry

1q53, NW_047565.2 from 12305221 to 12373089 (+) strand, upstream of Cyp2c77-ps

2c82-de9b

no entry

no entry

NW_047565.2 from 12376437 to 12376556 (+) strand

no entry

downstream of Cyp2c82-ps

no entry

no entry

1q53, NW_047565.2 from 12376437 to 12376556 (+) strand, fragment d on map downstream of Cyp2c82-ps

Cyp2c82-ps -se1[1:4:4:5]

no entry

no entry

NW_047565.2 from 11718386 to 11762135 (-) strand

no entry

frags w,x,y,z

no entry

no entry

1q53, NW_047565.2 from 11718386 to 11762135 (-) strand, downstream of Cyp2c7, fragments w,x,y,z in map. Nearly identical to Cyp2c82-ps

Cyp2c-se6[9]

no entry

no entry

NW_047565.2 from 11981913 to 11982023 (+) strand.

no entry

between Cyp2c6v1 and 2c7

no entry

no entry

1q53, NW_047565.2 from 11981913 to 11982023 (+) strand, upstream of 2c6v1, fragment q, 100% identical to Cyp2c82-de9b

2d1

2D gene cluster map

see related sequences under the Entrez Gene link

NM_153313.1

see reference assembly under the Entrez Gene link

NP_695225.1

Cyp2d1 lies between Cyp2d3-de8b and 2d5, labeled Cyp2d9 in UCSC browser for a mouse paralog

Rn.91133 (6 ESTs), incorrectly called Cyp2d9 in Unigene

Cyp2d1, incorrectly called Cyp2d9 for a mouse paralog

7q34, Chr7: 120769758- 120774054 paralog to Cyp2d9, 10, 11, 12 and 34 mouse

2d2

see related sequences under the Entrez Gene link

NM_012730.1

see reference assembly under the Entrez Gene link

NP_036862.1

Cyp2d2is on the Cyp2d cluster telomeric edge, labeled Cyp2d26 in UCSC browser for the mouse ortholog

Rn.91355 (35 ESTs), incorrectly called Cyp2d26 in Unigene

Cyp2d2, incorrectly called Cyp2d26 for the mouse ortholog

7q34, Chr7: 120796281- 120800179 (-) strand, ortholog to Cyp2d26 mouse

2d3

see related sequences under the Entrez Gene link

NM_173093.1

see reference assembly under the Entrez Gene link

NP_775116.1

Cyp2d3is downstream of Cyp2d2, labeled Cyp2d13 in UCSC browser for a mouse paralog

Rn.32106 (4 ESTs), incorrectly called Cyp2d13 in Unigene

Cyp2d3, incorrectly called Cyp2d13 for a mouse paralog

7q34, Chr7: 120778853- 120783085 (-) strand, paralog to Cyp2d13, and Cyp2d40 mouse

2d3-de8b

no entry

no entry

AABR03059025 from 8776 to 8916 (+) strand

no entry

Cyp2d3-de8b is downstream of Cyp2d3

no entry

no entry

7q34, Chr7: 120776836- 120776976 (+) strand

2d4v1

multiple

see evidence

X52029

no entry

CAA36271.1

Cyp2d4 at the centromeric edge of the 2d cluster, labled 2d22 in browser

Rn.26060 (24 ESTs), incorrectly called Cyp2d22 in Unigene

Cyp2d4, incorrectly named Cyp2d22 for the mouse ortholog

7q34, Chr7: 120742343- 120746916 Cyp2d22 mouse ortholog. Note: Cyp2d4v1 and v2 are alleles

2d4v2

2d18X

multiple

see evidence

NM_138515

NW_001084859 from 55272115 to 55276414 (-) strand

NW_047781 from 1192409 to 1196982 (-) strand

NP_612524

Cyp2d4 at the centromeric edge of the 2d cluster, labled 2d22 in browser

Rn.26060 (24 ESTs), incorrectly called Cyp2d22 in Unigene

Cyp2d4, incorrectly named Cyp2d22 for the mouse ortholog

7q34, Chr7: 120742343- 120746916 Cyp2d22 mouse ortholog. Note: Cyp2d4v2 or Cyp2d18 is an allelic form. Both 2d4v1 and 2d4v2 are found in rat libraries UI-R-C0 Sprague-Dawley Mixed tissue and UI-R-BJ2 Sprague-Dawley heart

2d5

see related sequences under the Entrez Gene link

NM_173304.2

see reference assembly under the Entrez Gene link

NP_775426.1

Cyp2d5 lies between of Cyp2d1 and Cyp2d4, labeled Cyp2d10 in UCSC browser for a mouse paralog

Rn.10842 (8 ESTs), incorrectly called Cyp2d10 in Unigene

Cyp2d5, incorrectly called Cyp2d10 for a mouse paralog

7q34, Chr7: 120760493- 120764924 (-) strand, paralog to Cyp2d9, 10, 11, 12 and 34 mouse

2d-se2[9]

no entry

no entry

AAHX01051862 from 15103 to 15261 (+) strand

AABR03057129 from 5564 to 5722 (+) strand

no entry

Cyp2d3-de8b is 424 kb downstream of Cyp2d4

no entry

no entry

7q34, Chr7: 120352177- 120352335 (+) strand, ortholog to Cyp2d-se1 [1:8:9] mouse

2e1

see related sequences under the Entrez Gene link

NM_031543

see reference assembly under the Entrez Gene link

NP_062176

Cyp2e1

Rn.1372 (241 ESTs)

Cyp2e1

1q41, Chr1: 200918535- 200928789 Cyp2e1 mouse ortholog, CYP2E1 human ortholog

2f4

see related sequences under the Entrez Gene link

NM_019303

see reference assembly under the Entrez Gene link

NP_062176

Cyp2f4 upstream of Cyp2t1

Rn.10817 mistakenly called 2f2 (16 ESTs)

Cyp2f4, mistakenly called 2f2

1q21, Chr1: 82191753- 82204368 Cyp2f2 mouse ortholog, CYP2F1P human ortholog

2g1

see related sequences under the Entrez Gene link

XM_341809.1

see reference assembly under the Entrez Gene link

XP_341810.1

Cyp2g1 upstream, of Cyp2a3

Rn.10909 (0 ESTs)

Cyp2g1

1q21, Chr1: 81918200- 81929261 Cyp2g1 mouse ortholog

2j3

2J gene cluster map

see related sequences under the Entrez Gene link

NM_175766.2

see reference assembly under the Entrez Gene link

NP_786942

Cyp2j3 upstream of Cyp2j4

Rn.91314 mistakenly called Cyp2j9 (15 ESTs)

Cyp2j3, mistakenly called Cyp2j9 for the mouse ortholog

5q33, Chr5: 116744586- 116766813, (-) strand Cyp2j9 mouse ortholog

2j4

see related sequences under the Entrez Gene link

NM_023025.2

see reference assembly under the Entrez Gene link

NP_075414.2

Cyp2j4 downstream of Cyp2j3

Rn.44992 (8 ESTs)

Cyp2j4

5q33, Chr5: 116703007- 116729676, (-) strand Cyp2j6 mouse ortholog

2j4-de6b

no entry

no entry

NW_047717.1 from 3437014 to 3437127 (-) strand, exon 6

NW_001084842 from 7773730 to 7773843 (-) strand, exon 6

no entry

Cyp2j4-de6b downstream of Cyp2j4

no entry

no entry

5q33, Chr5: 116700827- 116700940, (-) strand, pseudogene fragment w in map near Cyp2j4

2j5-ps

XM_001058925

XM_001062259

see reference assembly under the Entrez Gene links

XP_001062259

Cyp2j5-ps on the edge of the 2j cluster

no entry

LOC685092

LOC681907

5q33, Chr5: 116775111- 116779876, (-) strand, pseudogene, Cyp2j5 mouse ortholog

2j10

XM_233199.3

XM_233199.3

see reference assembly under the Entrez Gene link

XP_233199.2

Cyp2j10 upstream of Cyp2j13

Rn.34638 (9 ESTs)

RGD1563215 predicted

5q33, Chr5: 116474282- 116510778, (-) strand Cyp2j12 mouse ortholog

2j13

multiple, incorrectly called Cyp2j4, N-terminal incorrect

XM_001058570 incorrectly called Cyp2j4, N-terminal incorrect

AAHX01038582 from 893 to 9391 (-) strand, aa 71-287, missing exon 1

AAHX01038580 from 65199 to 69994 (-) strand, aa 288-502

multiple, incorrectly called Cyp2j4, N-terminal incorrect

Cyp2j13 at the centromeric edge of the 2j cluster, adjacent to hook1

Rn.105257 mistakenly called 2j4 (2 ESTs)

Cyp2j13, called RGD1560981 predicted

5q33, Chr5: 116417865- 116444068, Cyp2j13 mouse ortholog, missing exon 1

2j16

XM_578474.1

XM_001058738

see reference assembly under the Entrez Gene link

XP_578474.1

Cyp2j16

no entry no ESTs

RGD1561242 predicted

5q33, Chr5: 116607208- 116659546, (-) strand paralog to mouse Cyp2j7, 2j8 and 2j11

2j16-de2b5b9b

no entry

no entry

NW_047717.1 from 3408307 to 3422709 (-) strand, exons 2,5,9

NW_001084842 from 7746680 to 7760875 (-) strand, exons 2,5,9

no entry

Cyp2j16- de2b5b9b upstream of Cyp2j16

no entry

no entry

5q33, Chr5: 116672138- 116686522, (-) strand, pseudogene fragment x in map near Cyp2j16

2j16-de5c6c9c

no entry

no entry

NW_047717.1 from 3322791 to 3335313 (-) strand, exons 5,6,9

NW_001084842 from 7679302 to 7685011 (-) strand, exons 5,6,9

no entry

Cyp2j16- de5c6c9c downstream of Cyp2j16

no entry

no entry

5q33, Chr5: 116586604- 116599166, (-) strand, pseudogene fragment y in map near Cyp2j16

2j17-ps

no entry

no entry

NW_047717.1 from 3290608 to 3315497 (-) strand

NW_001084842 from 7647119 to 7672004 (-) strand

no entry

Cyp2j17-ps upstream of Cyp2j18-ps

no entry

no entry

5q33, Chr5: 116554421- 116579310, (-) strand, pseudogene

2j18-ps

no entry

no entry

NW_047717.1 from 3260185 to 3282296 (-) strand, exons 1,5,6,9

NW_001084842 from 7616668 to 7638803 (-) strand, exons 1,5,6,9

no entry

Cyp2j18-ps upstream of Cyp2j10

no entry

no entry

5q33, Chr5: 116524001- 116546109, (-) strand, pseudogene

2r1

XM_341909.2

XM_341909.2

see reference assembly under the Entrez Gene link

XP_341910.2

Cyp2r1

Rn.100758 (2 ESTs)

Cyp2r1 predicted

1q34, Chr1: 172593157- 172605498 (-) strand, Cyp2r1 mouse ortholog

2s1

see related sequences under the Entrez Gene link

XM_218347.4

see reference assembly under the Entrez Gene link

XP_218347.4

Cyp2s1 at the centromeric edge of the 2abfgst cluster, adjacent to AXL

Rn.127147 (37 ESTs)

Cyp2s1

1q21, Chr1: 81009538- 81023428 Cyp2s1 mouse ortholog

2t1

see related sequences under the Entrez Gene link

NM_134369

see reference assembly under the Entrez Gene link

NP_599196

Cyp2t1 at the telomeric edge of the 2abfgst cluster, adjacent to EGLN2

Rn.144661 (19 ESTs)

Cyp2t1

1q21, Chr1: 82229589- 82233144 Cyp2t4 mouse ortholog, CYP2T2P human ortholog

2u1

see related sequences under the Entrez Gene link

NM_001024779

see reference assembly under the Entrez Gene link

NP_001019950

Cyp2u1

Rn.161862 (15 ESTs)

Cyp2u1

2q43, Chr2: 228773463- 228788560 (-) strand, Cyp2u1 mouse ortholog, CYP2U1 human ortholog

2w1

XM_221971.4

XM_221971.4

see reference assembly under the Entrez Gene link

XP_221971.3

Cyp2w1

Rn.99881 (3 ESTs)

Cyp2w1 predicted

12q11, Chr12: 15792480- 15797199 (-) strand, Cyp2w1 mouse ortholog, CYP2W1 human ortholog

2ab1

XM_221297.4

XM_221297.4

see reference assembly under the Entrez Gene link

XP_221297.4

Cyp2ab1

no entry

Cyp2ab1, called LOC682122 some assembly errors

11q23, Chr11: 82825531- 82832852 (+) strand, Cyp2ab1-ps mouse ortholog, CYP2AB1P human ortholog

2ac1

XM_236969.3

XM_001067416

see reference assembly under the Entrez Gene link

XP_236969.3

Cyp2ac1

no entry

Cyp2ac1, RGD1564244 predicted

9q12, Chr9: 15907978- 15930164 (-) strand, Cyp2ac1-ps mouse ortholog, CYP2AC1P human ortholog, syntenic with 35 gene cluster in Xenopus

3a1

3A gene cluster map

M10161

no entry

no entry

no entry

no entry

no entry

no entry

12p11, Cyp3a1 is an older erroneous version of Cyp3a23, all differences are limited to one region that matches 100% to Cyp3a2

3a2

multiple A

multiple B

multiple C

NM_153312.2

NW_001084671 from 4830437 to 4852132 (-) strand

NP_695224.2

Cyp3a2, downstream of Cyp3a23/3a1

Rn.91120 mistakenly called Cyp3a3 (114 ESTs). This entry merges Cyp3a23 and Cyp3a2

Cyp3a2, Entrez Gene erroneously calls this gene Cyp3a11, a mouse paralog

12p11, Chr12: 9517446- 9540934,(-) strand

3a9

see related sequences under the Entrez Gene link

NM_147206.1 incorrectly called Cyp3a13

NW_047369.2 from 5146279 to 5186097 (+) strand

NP_671739.1, incorrectly called Cyp3a13

Cyp3a9 at the centromeric edge of the 3a cluster, 7.4Mb upstream of the rest of the cluster

Rn.10489 mistakenly called Cyp3a13 (11 ESTs)

Cyp3a9, mistakenly called Cyp3a13 for the mouse ortholog

12q11, Chr12: 17164476- 17204294, Cyp3a13 mouse ortholog

3a9-se1 [1:2:4]

NW_047369.2 from 5379494 to 5387818 (-) strand

no entry

12q11, see

3A gene cluster map

no entry

no entry, UCSC 2004 assembly is out of date in this region

no entry

no entry

12q11, 193 kb downstream of 3a9, 100% to exons 1,2,4 of 3a9

3a18

see related sequences under the Entrez Gene link

NM_145782.1

NW_001084671 from 4522401 to 4575298 (-) strand

NP_665725.1

Cyp3a18 UCSC browser is out of date at this location

Rn.32085 (7 ESTs)

Cyp3a18

12p11, see

3A gene cluster map

3a18-se1 [5:6:7:8]

NW_001084671 from 4473671 to 4477064 (-) strand

no entry

NW_001084671 from 4473671 to 4477064 (-) strand

no entry

no entry, UCSC 2004 assembly is out of date in this region

no entry

no entry

12p11, see

3A gene cluster map

3a23/3a1

see related sequences under the Entrez Gene link

NM_013105.1

NW_001084671 from 4878246 to 4905988 (-) strand

NP_037237.1

Cyp3a23/3a1 upstream of Cyp3a2

Rn.91120 mistakenly called Cyp3a3 (114 ESTs). This entry merges Cyp3a23 and Cyp3a2

Cyp3a23/3a1 Cyp3a1 is an older erroneous sequence of Cyp3a23, Entrez Gene erroneously calls this gene Cyp3a3, a discontinued human P450 name

12p11, Chr12: 9567224- 9595895,(-) strand

3a62

AB084894.1

NM_001024232

NW_001084671 from 11959448 to 11994522 (+) strand

NP_001019403

Cyp3a62 is in a sequence gap about 225 kb upstream of 3a9 (3a13 in this view), It is located on the (+) strand approx. 16905000- 16941000 in this view.

Rn.178925 (0 ESTs)

Cyp3a62

12q11, Chr12: in a gap in UCSC browser, see NCBI mapviewer RGSC v3.4

3a62-de11b

NW_001084671 from 11932479 to 11932637 (-) strand

no entry

NW_001084671 from 11932479 to 11932637 (-) strand

no entry

UCSC 2004 assembly is out of date in this region

see

3A gene cluster map

no entry

no entry

12q11, 26 kb upstream of 3a62, on opposite strand

3a71-ps

NW_047368.1 from 736541 to 789833 (-) strand

no entry

NW_001084671 from 4755911 to 4790114 (-) strand

no entry

Cyp3a71-ps

no entry

LOC690383 pseudogene, missing first 3 exons

12p11, Chr12: 9414424- 9467713, UCSC browser, downstream of Cyp3a2

3a73

multiple

XM_001070575

NW_001084671 from 4598652 to 4622792 (-) strand

XP_001070575

12p11, see

3A gene cluster map

no entry

LOC498198

12p11, Chr12: in a gap in UCSC browser, see NCBI mapviewer RGSC v3.4

3a85-ps

multiple

XM_001070664

NW_001084671 from 4788210 to 4790190 (-) strand

XP_001070664

12p11, see

3A gene cluster map

no entry

LOC498196 pseudogene, missing first four exons

12p11, Chr12: in a gap in UCSC browser, see NCBI mapviewer RGSC v3.4

4a1

4abx gene cluster map

see related sequences under the Entrez Gene link

NM_175837.1

see reference assembly under the Entrez Gene link

NP_787031.1

Cyp4a1 downstream of Cyp4b1, opposite strand

Rn.92401 (19 ESTs) mistakenly called Cyp4a22

Cyp4a1, mistakenly called Cyp4a22 (a human gene)

5q36, Chr5: 135901663- 135914839, (+) strand, paralog to mouse Cyp4a10, 4a31, and 4a32

4a2

see related sequences under the Entrez Gene link

NM_001044770

see reference assembly under the Entrez Gene link

NP_001038235

Cyp4a2 male specific, probably duplicated from Cyp4a3

Rn.33492 (72 ESTs) mistakenly called Cyp4a14 for a mouse paralog

Cyp4a2, mistakenly called Cyp4a11 (a human gene) probable paralog of mouse Cyp4a14

5q36, Chr5: 135765675- 135772990, (-) strand, exon 12 in a seq gap in UCSC browser. probable paralog of mouse Cyp4a14

4a3

see related sequences under the Entrez Gene link

NM_175760.2

see reference assembly under the Entrez Gene link

NP_786936.1

Cyp4a3

Rn.33492 (72 ESTs) This Unigene entry merges Cyp4a2 and Cyp4a3. Mistakenly called Cyp4a14 for a mouse paralog

Cyp4a3, mistakenly called Cyp4a14, probable paralog of mouse Cyp4a14

5q36, Chr5: 135876742- 135893741, (-) strand, probable paralog of mouse Cyp4a14

4a8v1

M37828

M37828

see reference assembly under the Entrez Gene link

AAA63485

Cyp4a8 upstream of Cyp4x1

Rn.10034 (10 ESTs) mistakenly called Cyp4a12 for a mouse paralog

Cyp4a8, mistakenly called Cyp4a12 for a mouse paralog. Mice have two Cyp4a12 genes.

5q36, Chr5: 135547794- 135578185, (-) strand, allele 97% to 4a8v2

4a8v2

see related sequences under the Entrez Gene link

NM_031605.2

see reference assembly under the Entrez Gene link

NP_113793.2

Cyp4a8 upstream of Cyp4x1

Rn.10034 (10 ESTs) mistakenly called Cyp4a12 for a mouse paralog

Cyp4a8, mistakenly called Cyp4a12 for a mouse paralog. Mice have two Cyp4a12 genes.

5q36, Chr5: 135547794- 135578185, (-) strand, probable paralog of mouse Cyp4a12a and 4a12b

4a8v2-de1b

no entry

no entry

NW_047718 from 6978054 to 6978242 (-) strand

no entry

Cyp4a8v2- de1b downstream of Cyp4a8, mistakenly called 4a12 in UCSC browser

no entry

no entry

5q36, Chr5: 135539924- 135540112 (-) strand, frag. a in 4ABX map

4a8v2- de5c6c12c

no entry

no entry

NW_047718 from 7026788 to 7029599 (-) strand

no entry

Cyp4a8v2- de5c6c12c upstream of Cyp4a8, mistakenly called 4a12 in UCSC browser

no entry

no entry

5q36, Chr5: 135588658-135591469 (-) strand, frag. b in 4ABX map

4a8v2- de4d12d

no entry

no entry

NW_047718 from 7050178 to 7061223 (-) strand

no entry

Cyp4a8v2- de4d12d upstream of Cyp4a8- de5c6c12c

no entry

no entry

5q36, Chr5: 135612048-135623093 (-) strand, frag. c in 4ABX map

4a33-ps

no entry

no entry

NW_047718 from 7122545 to 7133729 (+) strand

NW_001084843 from 8566435 to 8575958 (+) strand

no entry

Cyp4a33-ps between Cyp4a8 and Cyp4a2 on the (+) strand

no entry

no entry

5q36, chr5:135684415- 135695599 (+) strand

4a33-ps- de4b5b12b

no entry

no entry

NW_047718 from 7095003 to 7109943 (+) strand

NW_001084843 from 8542025 to 8556485 (+) strand

no entry

Cyp4a33-ps- de4b5b12b upstream of 4a33-ps on the (+) strand

no entry

no entry

5q36, chr5: 135656906- 135671813 (+) strand

4a33-ps- de10c11c

no entry

no entry

NW_047718 from 7145654 to 7146029 (+) strand

NW_001084843 from 8588390 to 8588458 (+) strand one exon only

no entry

Cyp4a33-ps- de10c11c downstream of 4a33-ps on the (+) strand

no entry

no entry

5q36, chr5: 135707524- 135707899 (+) strand

4a34-ps

no entry

no entry

NW_047718 from 7270606 to 7278870 (+) strand

NW_001084843 from 8689556 to 8697782 (+) strand

no entry

Cyp4a34-ps between Cyp4a2 and Cyp4a3 on the (+) strand

no entry

LOC690034

5q36, chr5: 135832476- 135840740 (+) strand

4a34-ps-de12b

no entry

no entry

NW_047718 from 7264222 to 7264388 (+) strand

NW_001084843 from 8683144 to 8683310 (+) strand

no entry

upstream of Cyp4a34-ps on the (+) strand

no entry

no entry

5q36, chr5: 135826092- 135826258 (+) strand

4b1

4abx gene cluster map

see related sequences under the Entrez Gene link

NM_016999.2

see reference assembly under the Entrez Gene link

NP_058695.2

Cyp4b1 at the telomeric edge of the 4abx cluster

Rn.86651 (29 ESTs)

Cyp4b1

5q36, Chr5: 135917709- 135934634, Cyp4b1 mouse ortholog and CYP4B1 human ortholog

4f1

4F gene cluster map

see related sequences under the Entrez Gene link

NM_019623.2

see reference assembly under the Entrez Gene link

NP_062569.2

Cyp4f1 downstream of Cyp4f6

Rn.5722 (22 ESTs) mistakenly called Cyp4f2

Cyp4f1 mistakenly called Cyp4f2, a human gene

7q11, Chr7: 13590050- 13600726, (-) strand Cyp4f14 mouse ortholog

4f4

see related sequences under the Entrez Gene link

NM_173123.1

see reference assembly under the Entrez Gene link

NP_775146.1

Cyp4f4 downstream of Cyp4f40

Rn.10170 (10 ESTs)

Cyp4f4

7q11, Chr7: 13293478- 13309024 (+) strand Cyp4f15 mouse ortholog

4f5

see related sequences under the Entrez Gene link

NM_173124.1

see reference assembly under the Entrez Gene link

NP_775147.1

Cyp4f5 upstream of Cyp4f37, downstream of 4f17

Rn.10171 (4 ESTs)

Cyp4f5

7q11, Chr7: 13119940- 13133268 (+) strand Cyp4f16 mouse ortholog

4f6

see related sequences under the Entrez Gene link

NM_153318.1

see reference assembly under the Entrez Gene link

NP_695230.1

Cyp4f6 upstream of Cyp4f1, at the edge of the 4f cluster

Rn.11269 (39 ESTs)

Cyp4f6

7q11, Chr7: 13609130- 13635825 (-) strand Cyp4f13 mouse ortholog

4f17

XM_576190.2

XM_576190.2

see reference assembly under the Entrez Gene link

XP_576190.2

Cyp4f17 downstream of Cyp4f39, upstream of Cyp4f5

Rn.43212 (17 ESTs) RGD1561655 predicted

RGD1561655 predicted

7q11, Chr7: 13095557- 13111057 (+) strand Cyp4f17 mouse ortholog

4f18

XM_224708

NM_001033686

see reference assembly under the Entrez Gene link

NP_001028858

Cyp4f18 outside the Cyp4f cluster

Rn.144749 (5 ESTs)

Cyp4f18

16p14, Chr16: 18197905- 18224008, (+) strand Cyp4f18 mouse ortholog

4f37

XM_001077664

XM_001077664

see reference assembly under the Entrez Gene link

XP_001077664

Cyp4f37 downstream of Cyp4f5

Rn.162918 (1 EST)

LOC691312

LOC687331 this appears to be the same seq

7q11, Chr7: 13149326- 13169807 (+) strand Cyp4f37 mouse ortholog

4f39

XM_234837.4

XM_234837.4

see reference assembly under the Entrez Gene link

XP_234837.3

Cyp4f39 at the centromeric edge of the 4f cluster

Rn.152974 (1 EST), RGD1308796 predicted

Cyp4f39, called RGD1308796 predicted

7q11, Chr7: 135496568- 135527509, Cyp4f39 mouse ortholog and CYP4F22 human ortholog

4f40

XM_578642.2

XM_001078074

see reference assembly under the Entrez Gene link

XP_001078074

Cyp4f40 upstream of Cyp4f4

no entry

RGD1559596 predicted

7q11, Chr7: 13268033- 13282099 (+) strand Cyp4f40 mouse ortholog

4f43-ps

no entry

no entry

NW_001084852 from 7864386 to 7893383 (+) strand

NW_047773.2 from 13179984 to 13208952 (+) strand

no entry

Cyp4f43-ps downstream of Cyp4f37

no entry

no entry

7q11, Chr7: 13179984- 13208952 (+) strand

4f44-ps

no entry

no entry

NW_001084852 from 7816458 to 7924953 (+) strand

NW_047773.2 from 13123029 to 13240554 (+) strand

no entry

Cyp4f44-ps upstream of Cyp4f40

no entry

no entry

7q11, Chr7: 13215861- 13240554 (+) strand

4v3 (not part of the Cyp4abx gene cluster)

multiple

XM_001064152

AAHX01087939 from 39150 to 62474 (+) strand

AABR03100221 from 14831 to 38155 (+) strand

XP_001064152

Cyp4v3

Rn.201722 (32 ESTs), (LOC266761)

Cyp4v3 predicted

16q11, Chr16: 50208928- 50232252 (+) strand, Cyp4v3 mouse ortholog and CYP4V2 human ortholog

4x1

4abx gene cluster map

AF439343

NM_145675.1

see reference assembly under the Entrez Gene link

NP_663708

Cyp4x1 at the centromeric edge of the 4abx cluster

Rn.85477 (10 ESTs)

Cyp4x1

5q36, Chr5: 135496568- 135527509, Cyp4x1 mouse ortholog and CYP4X1 human ortholog

5a1

see related sequences under the Entrez Gene link

NM_012687

see reference assembly under the Entrez Gene link

NP_036819.1

Cyp5a1, Tbxas1

Rn.16283 (14 ESTs)

Cyp5a1, Tbxas1

4q22, Chr4: 66502382- 66677420 (+) strand, thromboxane A synthase 1

7a1

see related sequences under the Entrez Gene link

NM_012942.1

see reference assembly under the Entrez Gene link

NP_037074.1

Cyp7a1

Rn.10737 (5 ESTs)

Cyp7a1

5q12, Chr5: 19709157- 19716822 (-) strand, cholesterol 7 alpha hydroxylase

7b1

see related sequences under the Entrez Gene link

XM_342218.3

see reference assembly under the Entrez Gene link

XP_342219.1

Cyp7b1

Rn.53969 (10 ESTs)

Cyp7b1

5q12, Chr2: 103103879- 103271155 (-) strand, 27 hydroxy cholesterol 7 alpha hydroxylase

8a1

see related sequences under the Entrez Gene link

NM_031557.2

see reference assembly under the Entrez Gene link

NP_113745.1

Cyp8a1

Rn.73051 (32 ESTs)

Cyp8a1, Ptgis

3q42, Chr3: 158357015- 158387909 (-) strand prostaglandin I2 (prostacyclin) synthase

8b1

see related sequences under the Entrez Gene link

NM_031241.1

see reference assembly under the Entrez Gene link

NP_112520.1

Cyp8b1

Rn.23013 (91 ESTs)

Cyp8b1

8q32, Chr8: 127018941- 127020440 (+) strand

11a1

see related sequences under the Entrez Gene link

NM_017286.1

see reference assembly under the Entrez Gene link

NP_058982.1

Cyp11a1

Rn.1401 (44 ESTs)

Cyp11a1

8q24, Chr8: 61793976- 61805308 (+) strand, cholesterol side chain cleavage enzyme

11b1

see related sequences under the Entrez Gene link

NM_012537.2

see reference assembly under the Entrez Gene link

NP_036669.2

Cyp11b1, downstream of Cyp11b3, upstream of 11b1-ps

Rn.198235 (2 ESTs)

Cyp11b1

7q34, Chr7: 112978586- 112984080 (-) strand, steroid 11 beta hydroxylase

11b1-ps

XM_343261

XM_343261

no entry

XP_343262

Cyp11b1-ps, downstream of Cyp11b1

no entry

no entry

7q34, Chr7: 112948968- 112953446 (-) strand, pseudogene

11b2

see related sequences under the Entrez Gene link

NM_012538.1

see reference assembly under the Entrez Gene link

NP_036670.1

Cyp11b2, upstream of Cyp11b3

Rn.144549 (1 EST)

Cyp11b2

7q34, Chr7: 113044551- 113049779 (-) strand, aldosterone synthase

11b3

see related sequences under the Entrez Gene link

NM_181824.1

see reference assembly under the Entrez Gene link

NP_861545.1

Cyp11b3, upstream of Cyp11b1, downstream of Cyp11b2

Rn.198236 (0 ESTs)

Cyp11b3

7q34, Chr7: 113013335- 113018824 (-) strand

17a1

see related sequences under the Entrez Gene link

NM_012753.1

see reference assembly under the Entrez Gene link

NP_036885.1

Cyp17a1

Rn.10172 (44 ESTs)

Cyp17a1

1q54, Chr1: 251965612- 251971419 (-) strand

19a1

see related sequences under the Entrez Gene link

NM_017085.1

see reference assembly under the Entrez Gene link

NP_058781.1

Cyp19a1

Rn.21402 (0 ESTs) note: very odd, human has 1631 ESTs but mouse has only 10

Cyp19a1

8q24, Chr8: 57651959- 57672054 (-) strand, aromatase, first exon in a seq gap, note last 15 amino acids on opposite strand, assembly error?

20a1

see related sequences under the Entrez Gene link

NM_199401.1

see reference assembly under the Entrez Gene link

NP_955433.1

Cyp20a1

Rn.101629 (14 ESTs)

Cyp20a1

9q31, Chr9: 58907552- 58972740 (+) strand

20a1-ps

no entry

no entry

AAHX01074334 from 148288 to 148550 (-) strand

AABR03084635 from 81263 to 81525 (-) strand

no entry

Cyp20a1-ps

no entry

no entry

13p12, Chr13: 18044633- 18044858 (-) strand

21a1

see related sequences under the Entrez Gene link

NM_057101.1

see reference assembly under the Entrez Gene link

NP_476442.1

Cyp21a1

Rn.161726 (2 ESTs)

Cyp21a1

20p12, Chr20: 4125365- 4128045 (+) strand

21a1-ps

AY091789

no entry

see reference assembly under the Entrez Gene link

no entry

Cyp21a1-ps downstream of C4-2

no entry

Cyp21a1-ps

20p12, Chr20: 4335612- 4335803 (+) strand

24a1

see related sequences under the Entrez Gene link

NM_201635.1

see reference assembly under the Entrez Gene link

NP_963966.1

Cyp24a1

Rn.100353 (5 ESTs)

Cyp24a1

3q42, Chr3: 161542134- 161553801 (-) strand

26a1

see related sequences under the Entrez Gene link

NM_130408.2

see reference assembly under the Entrez Gene link

NP_569092.2

Cyp26a1

Rn.81072 (0 ESTs)

Cyp26a1

1q53, Chr1: 241945662- 241949177 (-) strand

26b1

see related sequences under the Entrez Gene link

NM_181087.2

see reference assembly under the Entrez Gene link

NP_851601.1

Cyp26b1

Rn.19898 (24 ESTs)

Cyp26b1

4q34, Chr4: 118737641- 118751450 (-) strand

26c1

XM_217935.3

XM_217935.3

see reference assembly under the Entrez Gene link

XP_217935.3

Cyp26c1, upstream of Cyp26a1

no entry, no ESTs

Cyp26c1 predicted

1q53, Chr1: 241954251- 241961689 (-) strand

27a1

see related sequences under the Entrez Gene link

NM_178847.1

see reference assembly under the Entrez Gene link

NP_849178.1

Cyp27a1

Rn.94956 (60 ESTs)

Cyp27a1

9q33, Chr9: 74039243- 74068406 (+) strand

27b1

see related sequences under the Entrez Gene link

NM_053763.1

see reference assembly under the Entrez Gene link

NP_446215.1

no hit in the UCSC browser, in a seq gap near CDK4

Rn.10847 (0 ESTs)

Cyp27b1

7q22, Chr7: in a gap in UCSC browser, see NCBI mapviewer RGSC v3.4

39a1

XM_001068520

XM_236983.4

see reference assembly under the Entrez Gene link

XP_236983.4

Cyp39a1

no entry, no ESTs

Cyp39a1 predicted

9q12, Chr9: 12927591- 13002264 (-) strand

46a1

XM_001069311

XM_343108.3

see reference assembly under the Entrez Gene link

XP_343109.1

Cyp46a1

Rn.20301 (21 ESTs)

Cyp46a1 predicted

6q32, Chr6: 132704922- 132731433 (+) strand

51a1

see related sequences under the Entrez Gene link

NM_012941.2

see reference assembly under the Entrez Gene link

NP_037073.1

Cyp51a1

Rn.107152 (122 ESTs)

Cyp51a1 predicted

4q13, Chr4: 26752792- 26769687 (+) strand

51a1-ps1

D87997

XM_234202

AC079389.2 from 80830 to 822677

XP_234202

Cyp51a1-ps1

no entry

LOC314154 note: includes D78370, but not an exact match. This may be a poor quality sequence of D87997. No genomic matches are found to it.

6q23, Chr6: 79726860- 79728297 (-) strand