LOCUS       AC069294   202495 bp    DNA             HTG       07-JUL-2000
>gb|AC069294.3|AC069294 Homo sapiens chromosome 7 clone RP11-757A13, WORKING DRAFT 
SEQUENCE, 25
              unordered pieces
          Length = 202495

P450 sequences are on 18/25 contigs

            *        1     1895: contig of 1895 bp in length
            *     1896     1995: gap of unknown length
            *     1996     3958: contig of 1963 bp in length
            *     3959     4058: gap of unknown length
            *     4059     5959: contig of 1901 bp in length
            *     5960     6059: gap of unknown length
            *     6060     7936: contig of 1877 bp in length
            *     7937     8036: gap of unknown length
3A4*     8037    10096: contig of 2060 bp in length
            *    10097    10196: gap of unknown length
            *    10197    13291: contig of 3095 bp in length
            *    13292    13391: gap of unknown length
3A43*    13392    18036: contig of 4645 bp in length
            *    18037    18136: gap of unknown length
            *    18137    22483: contig of 4347 bp in length
            *    22484    22583: gap of unknown length
3A4*    22584    26512: contig of 3929 bp in length
            *    26513    26612: gap of unknown length
3A7*    26613    32830: contig of 6218 bp in length
            *    32831    32930: gap of unknown length
3A5*    32931    37850: contig of 4920 bp in length
            *    37851    37950: gap of unknown length
3A5*    37951    43584: contig of 5634 bp in length
            *    43585    43684: gap of unknown length
3A7*    43685    50021: contig of 6337 bp in length
            *    50022    50121: gap of unknown length
3A4*    50122    55724: contig of 5603 bp in length
            *    55725    55824: gap of unknown length
3A7*    55825    62202: contig of 6378 bp in length
            *    62203    62302: gap of unknown length
3A4*    62303    68594: contig of 6292 bp in length
            *    68595    68694: gap of unknown length
3A?*    68695    77918: contig of 9224 bp in length
            *    77919    78018: gap of unknown length
3A?*    78019    87885: contig of 9867 bp in length
            *    87886    87985: gap of unknown length
            *    87986    98061: contig of 10076 bp in length
            *    98062    98161: gap of unknown length
3A4*    98162   108878: contig of 10717 bp in length
            *   108879   108978: gap of unknown length
3A43*   108979   125599: contig of 16621 bp in length
            *   125600   125699: gap of unknown length
3A7*   125700   142624: contig of 16925 bp in length
            *   142625   142724: gap of unknown length
3A?*   142725   161380: contig of 18656 bp in length
            *   161381   161480: gap of unknown length
3A43 + ?exon*   161481   178973: contig of 17493 bp in length
            *   178974   179073: gap of unknown length
3A43*   179074   202495: contig of 23422 bp in length.

Contig 5 3A4

Score = 48.4 bits (113), Expect = 0.001
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -3

Query: 266  HRVDFLQLMIDSQNSKETESHK 287
            HRVDFLQLMIDSQNSKETESHK
Sbjct: 8495 HRVDFLQLMIDSQNSKETESHK 8430

Score = 87.8 bits (214), Expect = 2e-15
 Identities = 42/46 (91%), Positives = 44/46 (95%)
 Frame = -1

Query: 220  FLSIIFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQK 265
            F + +FPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQK
Sbjct: 9319 FPTAVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQK 9182

contig 7 3A43


Score =  103 bits (254), Expect = 4e-20
 Identities = 46/60 (76%), Positives = 52/60 (86%)
 Frame = +1

Query: 413   FLPERFSKKNKDNIDPYTYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQI 472
             +   RFSKKNKD+ID Y Y PFG+GPRNCIGMRFAL N+KLA+IR LQNFSFKPCKETQ+
Sbjct: 14605 YCESRFSKKNKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSFKPCKETQV 14784

Score = 43.0 bits (99), Expect = 0.066
 Identities = 21/31 (67%), Positives = 23/31 (73%)
 Frame = +2

Query: 471   QIPLKLSLGGLLQPEKPVVLKVESRDGTVSG 501
             QIPLKL    +LQPEKP+VLKV  RDG  SG
Sbjct: 16985 QIPLKLDNLPILQPEKPIVLKVHLRDGITSG 17077

contig 9 3A4

Score = 48.4 bits (113), Expect = 0.001
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = +2

Query: 1     MAVIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGI 38
             MA+IPDLAMETWLLLAVSLVLLYL  T    L   LG+
Sbjct: 25601 MALIPDLAMETWLLLAVSLVLLYL*VTVQAPLLCFLGL 25714

contig 10 3A7

Score = 65.6 bits (157), Expect = 1e-08
 Identities = 33/48 (68%), Positives = 38/48 (78%)
 Frame = +1

Query: 75    YDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAE 122
             YD QQP+LAITDPDMIKTVLVKECYSVFTNRR    + F+K   S+ +
Sbjct: 29707 YDCQQPMLAITDPDMIKTVLVKECYSVFTNRRV--SIHFLKLKYSLID 29844

Score = 78.8 bits (191), Expect = 1e-12
 Identities = 36/39 (92%), Positives = 39/39 (99%)
 Frame = +1

Query: 107   PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEM 145
             PFGPVGFMK+AISIAEDEEWKR+RSLLSPTFTSGKLKE+
Sbjct: 32476 PFGPVGFMKNAISIAEDEEWKRIRSLLSPTFTSGKLKEV 32592

contig 11 3A5 100%

Score = 43.8 bits (101), Expect = 0.038
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = +1

Query: 1     MAVIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGI 38
             M +IP+LA+ETWLLLAVSLVLLYL  T    LF  L +
Sbjct: 33604 MDLIPNLAVETWLLLAVSLVLLYL*VTVQTPLFVSLDL 33717

Score = 64.0 bits (153), Expect = 3e-08
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = +2

Query: 20    VLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMEC 64
             V L  YGT +HGLFK+LGIPGPTPLP LGN+LSY +  C+  + C
Sbjct: 37277 VSLCRYGTRTHGLFKRLGIPGPTPLPLLGNVLSYRQVSCLSFLFC 37411

contig 12 3A5

Score = 62.8 bits (150), Expect = 7e-08
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +3

Query: 75    YDGQQPVLAITDPDMIKTVLVKECYSVFTNRR 106
             Y+GQ PVLAITDPD+I+TVLVKECYSVFTNRR
Sbjct: 40974 YEGQLPVLAITDPDVIRTVLVKECYSVFTNRR 41069

contig 13 3A7

Score = 50.8 bits (119), Expect = 3e-04
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = -2

Query: 471   QIPLKLSLGGLLQPEKPVVLKVESRDGTVSGA 502
             QIPLKL  GGLL  EKP+VLK ESRD TVSGA
Sbjct: 44592 QIPLKLRFGGLLLTEKPIVLKAESRDETVSGA 44497

Score =  116 bits (289), Expect = 3e-24
 Identities = 52/56 (92%), Positives = 55/56 (97%)
 Frame = -3

Query: 417   RFSKKNKDNIDPYTYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQI 472
             RFSKKNKDNIDPY YTPFGSGPRNCIGMRFAL+NMKLAL+RVLQNFSFKPCKETQ+
Sbjct: 46970 RFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFKPCKETQV 46803

Score =  153 bits (383), Expect = 3e-35
 Identities = 74/96 (77%), Positives = 79/96 (82%)
 Frame = -2

Query: 322   THPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVE 381
             T   V  K+    +  L  +APPTYDTVLQ+EYLDMVVNETLRLFP+AMRLERVCKKDVE
Sbjct: 48315 TELKVNSKISIYPNLFLSFQAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVE 48136

Query: 382   INGMFIPKGWVVMIPSYALHRDPKYWTEPEKFLPER 417
             INGMFIPKG VVMIPSY LH DPKYW EPEKFLPER
Sbjct: 48135 INGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLPER 48028

Score =  101 bits (248), Expect = 2e-19
 Identities = 50/59 (84%), Positives = 54/59 (90%)
 Frame = -2

Query: 288   ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY 346
             ALSDLEL+AQSIIFIFAGYETTSSVLSFI+YELATHPDVQQK+Q+EID VLPNK    Y
Sbjct: 49887 ALSDLELMAQSIIFIFAGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKVSGQY 49711

contig 14

Score = 61.3 bits (146), Expect = 2e-07
 Identities = 29/30 (96%), Positives = 30/30 (99%)
 Frame = -1

Query: 145   MVPIIAQYGDVLVRNLRREAETGKPVTLKD 174
             MVPIIAQYGDVLVRNLRREAETGKPVTLK+
Sbjct: 50821 MVPIIAQYGDVLVRNLRREAETGKPVTLKE 50732

Score = 80.8 bits (196), Expect = 3e-13
 Identities = 38/39 (97%), Positives = 39/39 (99%)
 Frame = -3

Query: 107   PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEM 145
             PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKE+
Sbjct: 51200 PFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEV 51084

Score = 72.2 bits (174), Expect = 1e-10
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = -1

Query: 74    FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRR 106
             FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRR
Sbjct: 53653 FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRR 53555

contig 15 3A7

Score = 44.5 bits (103), Expect = 0.022
 Identities = 19/22 (86%), Positives = 22/22 (99%)
 Frame = -1

Query: 266   HRVDFLQLMIDSQNSKETESHK 287
             HRVDFLQLMIDSQNSK++E+HK
Sbjct: 58315 HRVDFLQLMIDSQNSKDSETHK 58250

Score = 66.3 bits (159), Expect = 6e-09
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = -2

Query: 219   FFLSIIFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQK 265
             FF + +FPFL PILE LNI VFPR+V +FL KSVK++KE RL++TQK
Sbjct: 59475 FFSTEVFPFLTPILEALNITVFPRKVISFLTKSVKQIKEGRLKETQK 59335

Score = 92.4 bits (226), Expect = 8e-17
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = -1

Query: 175   VFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSI 223
             VFGAYSMDVITSTSFGV+IDSLNNPQDPFVENTKKLLRF+ LDPF LSI
Sbjct: 60685 VFGAYSMDVITSTSFGVSIDSLNNPQDPFVENTKKLLRFNPLDPFVLSI 60539

Score = 51.5 bits (121), Expect = 2e-04
 Identities = 26/33 (78%), Positives = 26/33 (78%)
 Frame = -3

Query: 146   VPIIAQYGDVLVRNLRREAETGKPVTLKDVFGA 178
             VPIIAQYGDVLVRNLRRE    KPVTLK   GA
Sbjct: 62045 VPIIAQYGDVLVRNLRREGRERKPVTLKQ*VGA 61947

contig 16

Score = 44.1 bits (102), Expect = 0.029
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -2

Query: 55    KGFCMFDMECHKKYGKVCG 73
             +GFCMFDMECHKKYGKV G
Sbjct: 65637 QGFCMFDMECHKKYGKVWG 65581

Score = 73.4 bits (177), Expect = 5e-11
 Identities = 33/36 (91%), Positives = 33/36 (91%)
 Frame = -2

Query: 20    VLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHK 55
             V L  YGTHSHGLFKKLGIPGPTPLPFLGNILSYHK
Sbjct: 67653 VSLCRYGTHSHGLFKKLGIPGPTPLPFLGNILSYHK 67546

contig 17 unidentified exon not 3A4, 5, 7, 43

Score = 61.3 bits (146), Expect = 2e-07
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -1

Query: 471   QIPLKLSLGGLLQPEKPVVLKVESRDGTVSG 501
             QIPLKL LGGLLQPEKP+VLKVESRDGTVSG
Sbjct: 73117 QIPLKLRLGGLLQPEKPIVLKVESRDGTVSG 73025

contig 18 3A?

Score = 42.6 bits (98), Expect = 0.086
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = +3

Query: 1     MAVIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGI 38
             M +IP+LA+ETWLLLAVSLVLLYL  T    L   LG+
Sbjct: 79782 MDLIPNLAVETWLLLAVSLVLLYLSVTVQIPLLC*LGL 79895

 Score = 60.9 bits (145), Expect = 3e-07
 Identities = 26/31 (83%), Positives = 27/31 (86%)
 Frame = +2

Query: 25    YGTHSHGLFKKLGIPGPTPLPFLGNILSYHK 55
             YG HSHGLFKKLGIPGPTPL FLG  LSYH+
Sbjct: 83975 YGAHSHGLFKKLGIPGPTPLLFLGTTLSYHQ 84067

contig 20

Score = 65.2 bits (156), Expect = 1e-08
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = -1

Query: 471    QIPLKLSLGGLLQPEKPVVLKVESRDGTVSGA 502
              QIPLKLSLGGLLQPEKPVVLKVESRDGTVSGA
Sbjct: 101347 QIPLKLSLGGLLQPEKPVVLKVESRDGTVSGA 101252

Score =  118 bits (294), Expect = 9e-25
 Identities = 54/56 (96%), Positives = 55/56 (97%)
 Frame = -3

Query: 417    RFSKKNKDNIDPYTYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQI 472
              RFSKKNKDNIDPY YTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ+
Sbjct: 104099 RFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQV 103932

Score =  162 bits (405), Expect = 9e-38
 Identities = 76/83 (91%), Positives = 78/83 (93%)
 Frame = -3

Query: 341    KAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGWVVMIPSYAL 400
              +APPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKG VVMIPSYAL
Sbjct: 105386 QAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYAL 105207

Query: 401    HRDPKYWTEPEKFLPERFSKKNK 423
              HRDPKYWTEPEKFLPER+    K
Sbjct: 105206 HRDPKYWTEPEKFLPERYKAPGK 105138

Score =  107 bits (265), Expect = 2e-21
 Identities = 55/59 (93%), Positives = 55/59 (93%)
 Frame = -3

Query: 288    ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY 346
              ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNK    Y
Sbjct: 107132 ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKVSGWY 106956

contig 21 3A43

Score = 84.7 bits (206), Expect = 2e-14
 Identities = 39/53 (73%), Positives = 44/53 (82%)
 Frame = -1

Query: 171    TLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSI 223
              TL   FGAY+MDVIT T FGVN+DSLNNPQDPF++N KKLL+ DFLDPF L I
Sbjct: 110476 TLLSFFGAYTMDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLI 110318

Score = 40.2 bits (92), Expect = 0.43
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -3

Query: 146    VPIIAQYGDVLVRNLRREAETGKPVTLKD 174
              VPII+Q GD+LVR+LR+EAE  K + LK+
Sbjct: 111842 VPIISQCGDMLVRSLRQEAENSKSINLKE 111756

Score = 68.7 bits (165), Expect = 1e-09
 Identities = 34/62 (54%), Positives = 44/62 (70%)
 Frame = -2

Query: 106    RPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAE 165
              +P GP+GF+KSA+S AEDEEWKR+R+LLSP FTS K KE    + + GD+ +   R   E
Sbjct: 112524 KPLGPMGFLKSALSFAEDEEWKRIRTLLSPAFTSVKFKE----VRK*GDL*LET*RMNLE 112357

Query: 166    TG 167
              TG
Sbjct: 112356 TG 112351

Score = 59.7 bits (142), Expect = 6e-07
 Identities = 26/31 (83%), Positives = 29/31 (92%)
 Frame = -1

Query: 75     YDGQQPVLAITDPDMIKTVLVKECYSVFTNR 105
              Y+GQQP+L I DPDMIKTVLVKECYSVFTN+
Sbjct: 115861 YEGQQPMLVIMDPDMIKTVLVKECYSVFTNQ 115769

 Score = 58.6 bits (139), Expect = 1e-06
 Identities = 29/39 (74%), Positives = 31/39 (79%)
 Frame = -3

Query: 15     LAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSY 53
              LA S +L +  GTHSH LFKKLGIPGPTPLPFLG IL Y
Sbjct: 123575 LAFSFIL*F--GTHSHKLFKKLGIPGPTPLPFLGTILFY 123465

contig 22 3A7

Score = 62.5 bits (149), Expect = 9e-08
 Identities = 28/36 (77%), Positives = 30/36 (82%)
 Frame = -2

Query: 20     VLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHK 55
              V L  YGT +HGLFKKLGIPGPTPLPFLGN LS+ K
Sbjct: 133176 VSLCRYGTRTHGLFKKLGIPGPTPLPFLGNALSFRK 133069

Score = 42.2 bits (97), Expect = 0.11
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = -1

Query: 1      MAVIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGI 38
              M +IP+LA+ETWLLLAVSL+LLYL  T    L   LG+
Sbjct: 137101 MDLIPNLAVETWLLLAVSLILLYL*VTVQAPLLCFLGL 136988

contig 23 unidentified

Score = 38.7 bits (88), Expect = 1.3
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +1

Query: 3      VIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGI 38
              +IP+LA+ETWLLLAVSLVL YL  T    L   LG+
Sbjct: 147730 LIPNLAVETWLLLAVSLVLHYLSVTVQIPLLC*LGL 147837

Score = 56.2 bits (133), Expect = 7e-06
 Identities = 26/36 (72%), Positives = 27/36 (74%)
 Frame = +2

Query: 20     VLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHK 55
              V L  Y THSHGLFK LGIPGP PL FLG  LSYH+
Sbjct: 151862 VSLCRYETHSHGLFKNLGIPGPRPLLFLGTTLSYHQ 151969

contig 24 3A43

Score = 85.4 bits (208), Expect = 1e-14
 Identities = 40/63 (63%), Positives = 50/63 (78%)
 Frame = -1

Query: 338    LPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGWVVMIPS 397
              L ++AP TYD ++QMEYLDMVV+ETLRLFP+  R+ RVCKKD+EING+  P+G  VM PS
Sbjct: 161677 LSSQAPVTYDALVQMEYLDMVVDETLRLFPVVSRVTRVCKKDIEINGVVNPQGLAVMGPS 161498

Query: 398    YAL 400
                L
Sbjct: 161497 MLL 161489

Score = 93.2 bits (228), Expect = 5e-17
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = -1

Query: 288    ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNK 341
              ALSDLELVAQSII IFA Y+TTS+ L FIMYELATHPDVQQKLQEEIDAVL NK
Sbjct: 163450 ALSDLELVAQSIIIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLANK 163289

Score = 46.5 bits (108), Expect = 0.006
 Identities = 22/32 (68%), Positives = 25/32 (77%)
 Frame = -3

Query: 265    KHRVDFLQLMIDSQNSKETESHKALSDLELVA 296
              +HRVDF Q MIDSQNSKET+SHK   +L L A
Sbjct: 166439 QHRVDFFQQMIDSQNSKETKSHKGNQELHLGA 166344

Score = 62.5 bits (149), Expect = 9e-08
 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 6/55 (10%)
 Frame = -2

Query: 217    DPFFLSI------IFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQK 265
              D FFL +      +FPFL P+ E LNI +FP++VT+FL+ S++RMKESRL+D QK
Sbjct: 167715 DLFFLFLFNFPIALFPFLTPVFEALNIGLFPKDVTHFLKNSIERMKESRLKDKQK 167551

Score = 39.9 bits (91), Expect = 0.57
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = -3

unidentified fragment

Query: 144    EMVPIIAQYGDVLVRNLRREAETGKPVTLK 173
              EM+ II  YGDV +RNLR++ E GKP+TL+
Sbjct: 173318 EMLLIIL*YGDVFLRNLRQKVEKGKPLTLR 173229

contig 25

Score = 37.5 bits (85), Expect = 2.9
 Identities = 16/24 (66%), Positives = 21/24 (86%)
 Frame = +2

Query: 1      MAVIPDLAMETWLLLAVSLVLLYL 24
              M +IP+ AMETW+L+A SLVLLY+
Sbjct: 196142 MDLIPNFAMETWVLVATSLVLLYM 196213


3A4 fragments
contig  9   1-24   1 diff
contig 16  25-71
contig 14  74-173
contig missing
contig  5 225-287
contig 20 288-502  2 diffs

3A5 fragments
contig 11 1-53 100%
contig 12 75-106

3A7 fragments
contig 23   3-54
contig missing
contig 10  75-144
contig 15 146-287
contig 13 288-502

3A43 fragments
contig 25    1-24
contig missing
contig 21   75-223
contig 24  225-397
fragment missing
contig  7  417-501

3A? Lone exon pseudogenes
contig 18 1-54
contig 24 144-173
contig 17 471-501