- human
- chimp
- Rhesus monkey
- Callithrix jacchus (marmoset)
- Tarsius syrichta (tarsier)
- Microcebus murinus (grey mouse-lemur)
- mouse
- rat
- cattle
- pig
- dog
- Opossum
- Tasmanian devil
- duckbilled platypus
- Apteryx australis (kiwi)
- chicken
- turkey
- zebrafinch
- mallard duck
- collared flycatcher
- chimney swift
- lizard
- Xenopus
- pufferfishes
- zebrafish
- Atlantic salmon
- Elephant shark
- lamprey
- Amphioxus genome
- Ciona (sea squirt)
- sea urchin
- Pompeii worm (Alvinella pompejana, polychaete
- C. elegans
- C. briggsae
- Planarian, Schmidtea mediterranea
- Dros. pseudoobscura
- Drosophila melanogaster
- Anopheles
- Aedes aegypti
- whitefly Trialeurodes vaporariorum
- Silkworm
- Monarch butterfly
- Lepidoptera
- Honeybee, Apis mellifera
- Dwarf honey bee, Apis florea,
- Bumble bee, Bombus terrestris
- parasitoid wasp, a hymenopteran
- Leaf cutter ant
- Argentine ant
- seed-harvester ant Jan. 28, 2015
- Rhodnius prolixus, kissing bug
- aphid
- All named public insect sequences
- Two-spotted spider mite
- Ixodes scapularis (tick)
- Daphnia pulex (water flea) first crustacean
- Sea anemone, a Cnidarian
- Hydra, a Cnidarian
- Trichoplax adhaerens
- sponge
- Monosiga (Choanoflagellates)